Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Hibiscus syriacus isolate:Gangneung | cultivar:Hibiscus syriacus Gangneung

ABSTRACT: Hibiscus syriacus isolate:Gangneung | cultivar:Hibiscus syriacus Gangneung Raw sequence reads

PROVIDER: PRJNA341314 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Similar Datasets

Small RNA transcriptome of Hibiscus syriacus provides insights into the potential influence of microRNAs in flower development and terpene synthesis

Project description:MicroRNAs (miRNAs) are essential small RNA molecules that regulate the expression of target mRNAs in plants and animals. Here, we aimed to identify miRNAs and their putative targets in Hibiscus syriacus, the national flower of South Korea. Therefore, we employed high-throughput sequencing of small RNAs obtained from four different tissues (i.e., leaf, root, flower, and ovary) and identified 33 conserved and 30 novel miRNA families, many of which showed differential tissue-specific expressions. In addition, we computationally predicted novel targets of miRNAs and validated some of them using 5′ rapid amplification of cDNA ends analysis. One of the validated novel targets of miR477 was a terpene synthase, the primary gene involved in the formation of disease-resistant terpene metabolites such as sterols and phytoalexins. In addition, a predicted target of conserved miRNAs, miR396, is SHORT VEGETATIVE PHASE, which is involved in flower initiation and is duplicated in Hibiscus syriacus. Collectively, this study provides the first reliable draft of the Hibiscus syriacus miRNA transcriptome that should constitute a basis for understanding the biological roles of miRNAs in Hibiscus syriacus.

2017-09-08 | GSE99329 | GEO

Hibiscus syriacus

Project description:Hibiscus syriacus overview

| PRJNA281962 | ENA

Hibiscus syriacus

Project description:Hibiscus syriacus Genome sequencing

| PRJNA245844 | ENA

Hibiscus syriacus cultivar:Gangneung

Project description:Hibiscus syriacus cultivar:Gangneung Genome sequencing and assembly

| PRJNA320964 | ENA

Hibiscus syriacus L.

Project description:Hibiscus syriacus L. Transcriptome or Gene expression

| PRJNA851843 | ENA

Hibiscus syriacus isolate:YM2019G1 | cultivar:Beakdansim

Project description:Draft genome information of white flower Hibiscus syriacus

| PRJNA535386 | ENA

Hibiscus syriacus

Project description:Small RNA transcriptome of Hibiscus syriacus provides insights into the potential influence of microRNAs in flower development and terpene synthesis

| PRJNA388107 | ENA

Hibiscus cannabinus

Project description:Hibiscus cannabinus Raw sequence reads

| PRJNA551777 | ENA

Hibiscus cannabinus

Project description:Hibiscus cannabinus Raw sequence reads

| PRJNA601550 | ENA

Hibiscus cannabinus

Project description:Hibiscus cannabinus Raw sequence reads

| PRJNA562629 | ENA