Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Lactobacillus delbrueckii subsp. sunkii strain:JCM 17838

ABSTRACT: Lactobacillus delbrueckii subsp. sunkii strain:JCM 17838 Genome sequencing and assembly

PROVIDER: PRJNA355244 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Similar Datasets

Transcriptional analysis of Lactobacillus delbrueckii subsp. delbrueckii during soy juice fermentation.

Project description:The objective of this study was to decipher the metabolism expressed by Lactobacillus delbrueckii subsp. delbrueckii CIRM-BIA865 during soy juice fermentation using transcriptomics. The whole genome was sequenced, assembled and annotated. CIRM-BIA865 was then used to ferment soy juice to produce a soy-based yogurt. Samples were analysed in kinetics during fermentation, at pH values of 6.5, 6, 5 and 4.6. RNA from CIRM-BIA865 were extracted and sequenced using paired-end Illumina. Reads were mapped using Bowtie2 on previously obtained genome of CIRM-BIA865. No mismatch were allowed. Reads mapped on CDS were counted using htseqcount.List of differentially expressed (DE) genes between two successive sampling times (determined by pH) were generated using DEseq2 with a modified t-test and a p-value adjusted by Bonferoni inferior to 0.05. Fold changes expressed how many times genes were induced along the fermentations.

2023-05-13 | E-MTAB-12095 | biostudies-arrayexpress

The gene expression characteristics involved in amino acids formation of Lactobacillus delbrueckii subsp. bulgaricus 2038

Project description:Transcriptional profiling of Lactobacillus delbrueckii subsp. bulgaricus 2038 during the growth in casein proteins conditioned medium compared with the start control (cells treated in whey conditioned medium). Identifying the genes that are differentially expressed during the growth of Lb. bulgaricus 2038 in casein proteins condition provides a starting point for the investigation of metabolic mechanisms.

2013-05-21 | GSE47103 | GEO

Lactobacillus delbrueckii subsp. delbrueckii DSM 20074 = JCM 1012

Project description:Genome sequencing of Lactobacillus delbrueckii subsp. delbrueckii JCM 1012

| PRJDB634 | ENA

Lactobacillus delbrueckii subsp. delbrueckii DSM 20074 = JCM 1012

Project description:Lactobacillus delbrueckii subsp. delbrueckii DSM 20074 = JCM 1012 Genome sequencing and assembly

| PRJNA354490 | ENA

The gene expression characteristics involved in amino acids formation of Lactobacillus delbrueckii subsp. bulgaricus 2038

2013-05-21 | E-GEOD-47103 | biostudies-arrayexpress

Lactobacillus delbrueckii subsp. sunkii strain:JCM 17838

Project description:Lactobacillus delbrueckii subsp. sunkii strain:JCM 17838 Genome sequencing and assembly

| PRJNA289290 | ENA

Lactobacillus delbrueckii subsp. indicus strain:JCM 15610

Project description:Lactobacillus delbrueckii subsp. indicus JCM 15610 genome sequencing and assembly

| PRJNA289289 | ENA

Lactobacillus delbrueckii subsp. delbrueckii strain:TUA4408L

Project description:Lactobacillus delbrueckii subsp. delbrueckii strain:TUA4408L Genome sequencing and assembly

| PRJNA383854 | ENA

Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842 = JCM 1002

Project description:Genome sequencing of Lactobacillus delbrueckii subsp. bulgaricus JCM 1002

| PRJDB769 | ENA

Lactobacillus delbrueckii subsp. delbrueckii strain:KCTC 13731

Project description:Lactobacillus delbrueckii subsp. delbrueckii Genome sequencing and assembly

| PRJNA355324 | ENA

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data