Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

5-Methylcytosine RNA methylation in Arabidopsis thaliana

ABSTRACT: 5-Methylcytosine RNA methylation in Arabidopsis thaliana

PROVIDER: PRJNA368700 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Similar Datasets

tRNA 5-methylcytosine in Arabidopsis thaliana

Project description:Here we use bisulfite conversion of RNA combined with high-throughput IIlumina sequencing (RBS-seq) to identify single-nucleotide resolution of m5C sites in transfer RNAs of all three sub-cellular transcriptomes of Arabidopsis thaliana. 5-methylcytosine sites in tRNAs were also determined in Arabidopsis T-DNA knockouts for the RNA methyltransferases TRM4A, TRM4B, TRDMT1, NSUN5 and NOP2A.

2015-10-01 | GSE68445 | GEO

Highly integrated epigenome maps in Arabidopsis - methylcytosine immunoprecipitation

Project description:Part of a set of highly integrated epigenome maps for Arabidopsis thaliana. Keywords: methylcytosine ChIP-chip on tiling array Identification of cytosine DNA methylation by methylcytosine immunoprecipitation and whole-genome oligonucleotide tiling microarrays for wildtype Columbia-0.

2008-04-20 | E-GEOD-10969 | biostudies-arrayexpress

Transcriptome-wide RNA 5-methylcytosine methylation in siliques of Arabidopsis thaliana

Project description:Here we use bisulfite conversion of rRNA depleted RNA combined with high-throughput Illumina sequencing (RBS-seq) to identify single-nucleotide resolution of m5C sites transcriptome-wide in Arabidopsis thaliana siliques. m5C sites were also analyzed in an Arabidopsis T-DNA knockout for the RNA methyltransferase TRM4B.

2017-04-07 | GSE80050 | GEO

Transcriptome-wide RNA 5-methylcytosine methylation in roots of Arabidopsis thaliana

Project description:Here we use bisulfite conversion of rRNA depleted RNA combined with high-throughput Illumina sequencing (RBS-seq) to identify single-nucleotide resolution of m5C sites transcriptome-wide in Arabidopsis thaliana roots. m5C sites were analyzed in wild type (WT) and an Arabidopsis T-DNA KO mutant for the RNA methyltransferase TRM4B.

2017-04-07 | GSE80052 | GEO

Transcriptome-wide RNA 5-methylcytosine methylation in shoots of Arabidopsis thaliana

Project description:Here we use bisulfite conversion of rRNA depleted RNA combined with high-throughput Illumina sequencing (RBS-seq) to identify single-nucleotide resolution of m5C sites transcriptome-wide in Arabidopsis thaliana seedlings. m5C sites were also analyzed in Arabidopsis trm4b-1 and trdmt1 T-DNA KO mutants for the RNA methyltransferases TRM4B and TRDMT1.

2017-04-07 | GSE80051 | GEO

Arabidopsis thaliana

Project description:Transcriptome-wide RNA 5-methylcytosine methylation in roots of Arabidopsis thaliana

| PRJNA317691 | ENA

Arabidopsis thaliana

Project description:Transcriptome-wide RNA 5-methylcytosine methylation in shoots of Arabidopsis thaliana

| PRJNA317690 | ENA

Arabidopsis thaliana

Project description:Transcriptome-wide RNA 5-methylcytosine methylation in siliques of Arabidopsis thaliana

| PRJNA317689 | ENA

rRNA 5-methylcytosine in Arabidopsis thaliana

Project description:Here we use bisulfite conversion of RNA combined with high-throughput IIlumina sequencing (RBS-seq) to identify single-nucleotide resolution of m5C sites in ribosomal RNAs of all three sub-cellular transcriptomes in Arabidopsis thaliana. m5C sites in rRNAs were also anlyzed in Arabidopsis T-DNA knockouts for the RNA methyltransferases TRM4A, TRM4B, TRDMT1, NSUN5, NOP2A, NOP2B and NOP2C.

2015-10-01 | GSE68444 | GEO

Highly integrated epigenome maps in Arabidopsis - methylcytosine immunoprecipitation

Project description:Part of a set of highly integrated epigenome maps for Arabidopsis thaliana. Keywords: methylcytosine ChIP-chip on tiling array

2008-04-21 | GSE10969 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data