Lake water metagenome
Ontology highlight
ABSTRACT:
PROVIDER: PRJNA370007 | ENA |
REPOSITORIES: ENA
Similar Datasets
Project description:Lake Erie metagenome: 2014 Microcystis bloom (St. WLE12, 100LTR) Raw sequence reads
| PRJNA369242 | ENA
Project description:Metatranscriptome of Microcystis bloom in Lake Erie 2014
| PRJNA354726 | ENA
Project description:Western Lake Erie 2014 algal bloom sequencing data
| PRJNA318386 | ENA
Project description:Bacteria isolated from a Lake Erie Microcystis bloom in 2017
| PRJNA521711 | ENA
Project description:Title: Metabologenomics reveals strain-level genetic and chemical diversity of Microcystis secondary metabolism
Author list: Colleen E. Yancey, Lauren Hart, Sierra Hefferan, Osama G. Mohamed, Sean A. Newmister, Ashootosh Tripathi, David H. Sherman, Gregory J. Dick
Short description of submission: 20 mzXML files collected for the crude extracts of 20 isolates of Microcystis from the Western Lake Erie Culture Collection (WLECC, https://doi.org/10.1016/j.hal.2023.102440).
2024-04-29 | MSV000094628 | MassIVE
Project description:Sequencing the metatranscriptome can provide information about the response of organisms to varying environmental conditions. We present a methodology for obtaining random whole-community mRNA from a complex microbial assemblage using Pyrosequencing. The metatranscriptome had, with minimum contamination by ribosomal RNA, significant coverage of abundant transcripts, and included significantly more potentially novel proteins than in the metagenome. Keywords: metatranscriptome, mesocosm, ocean acidification This experiment is part of a much larger experiment. We have produced 4 454 metatranscriptomic datasets and 6 454 metagenomic datasets. These were derived from 4 samples. The experiment is an ocean acidification mesocosm set up in a Norwegian Fjord in 2006. We suspended 6 bags containing 11,000 L of sea water in a Coastal Fjord and then we bubbled CO2 through three of these bags to simulate ocean acidification conditions in the year 2100. The other three bags were bubbled with air. We then induced a phytoplankton bloom in all six bags and took measurements and performed analyses of phytoplankton, bacterioplankton and physiochemical characteristics over a 22 day period. We took water samples from the peak of the phytoplankton bloom and following the decline of the phytoplankton bloom to analyses using 454 metagenomics and 454 metatranscriptomics. Day 1, High CO2 Bag and Day 1, Present Day Bag, refer to the metatranscriptomes from the peak of the bloom. Day 2, High CO2 Bag and Day 2, Present Day Bag, refer to the metatranscriptomes following the decline of the bloom. Obviously High CO2 refers to the ocean acidification mesocosm and Present Day refers to the control mesocosm. Raw data for both the metagenomic and metatranscriptomic components are available at NCBI's Short Read Archive at ftp://ftp.ncbi.nlm.nih.gov/sra/Studies/SRP000/SRP000101
2008-02-08 | E-GEOD-10119 | biostudies-arrayexpress