Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Escherichia coli strain:BW25113 JME76

ABSTRACT: Escherichia coli BW25113 JME76 resequencing genome sequencing

PROVIDER: PRJNA370043 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Similar Datasets

E. coli BW25113 frdC vs. E. coli BW25113 HW2

Project description:Glycerol is an attractive feedstock for biofuels since it accumulates as a byproduct during biodiesel operations; hence, it is interesting to consider converting glycerol to hydrogen using the formate hydrogen lyase system of Escherichia coli which converts pyruvate to hydrogen. Starting with Escherichia coli BW25113 frdC that lacks fumarate reductase to eliminate the negative effect of accumulated hydrogen on glycerol fermentation and by using both adaptive evolution and chemical mutagenesis combined with a selection method based on increased growth on glycerol, we obtained an improved strain, HW2, that produces 20-fold more hydrogen in glycerol medium (0.68 mmol/L/h) compared to that of frdC mutant. HW2 also grows 5-fold faster (0.25 1/h) than BW25113 frdC on glycerol, so it achieves a reasonable growth rate. Corroborating the increase in hydrogen production, glycerol dehydrogenase activity in HW2 increased 4-fold compared to BW25113 frdC. In addition, a whole-transcriptome study revealed that several pathways that would decrease hydrogen yields were repressed in HW2 (fbp, focA, and gatYZ) while a beneficial pathway, eno which encodes enolase was induced.

2010-10-31 | GSE18972 | GEO

Escherichia coli strain:BW25113 JBx_072899

Project description:Escherichia coli BW25113 JBx_072899 resequencing genome sequencing

| PRJNA370178 | ENA

Escherichia coli strain:BW25113 JME39

Project description:Escherichia coli BW25113 JME39 resequencing genome sequencing

| PRJNA370803 | ENA

Escherichia coli strain:BW25113 JME74

Project description:Escherichia coli BW25113 JME74 resequencing genome sequencing

| PRJNA370041 | ENA

Escherichia coli strain:BW25113 JME75

Project description:Escherichia coli BW25113 JME75 resequencing genome sequencing

| PRJNA370042 | ENA

Escherichia coli strain:BW25113 JME38

Project description:Escherichia coli BW25113 JME38 resequencing genome sequencing

| PRJNA370802 | ENA

Escherichia coli strain:BW25113 JME70

Project description:Escherichia coli BW25113 JME70 resequencing genome sequencing

| PRJNA370037 | ENA

Escherichia coli strain:BW25113 JME37

Project description:Escherichia coli BW25113 JME37 resequencing genome sequencing

| PRJNA370161 | ENA

Escherichia coli strain:BW25113 JME44

Project description:Escherichia coli BW25113 JME44 resequencing genome sequencing

| PRJNA370162 | ENA

Escherichia coli strain:BW25113 JME45

Project description:Escherichia coli BW25113 JME45 resequencing genome sequencing

| PRJNA370163 | ENA

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data