Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Trichomonascus petasosporus strain:YB-2093

ABSTRACT: Trichomonascus petasosporus NRRL YB-2093 Transcriptome

PROVIDER: PRJNA372890 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Similar Datasets

Expression analysis of Lodderomyces elongisporus NRRL YB-4239 grown in glucose or xylose

Project description:Investigation of whole genome gene expression level changes in Lodderomyces elongisporus NRRL YB-4239 grown aerobically in xylose, compared to the same strain grown aerobically in glucose. A six array study using total RNA recovered from three separate cultures of Lodderomyces elongisporus NRRL YB-4239 grown in glucose and three separate cultures of Lodderomyces elongisporus NRRL YB-4239 grown in xylose. Each array measures the expression level of 371,451 probes (average probe length 54.1 +/- 4.1 nt) tiled across the Lodderomyces elongisporus NRRL YB-4239 genome with a median spacing distance of 33 nt. During data processing, probes are filtered to include only those probes corresponding to annotated protein-coding genes.

2011-10-19 | E-GEOD-24855 | biostudies-arrayexpress

Expression analysis of Lodderomyces elongisporus NRRL YB-4239 grown in glucose or xylose

2011-10-20 | GSE24855 | GEO

Sugiyamaella americana strain:NRRL YB-2067

Project description:Sugiyamaella americana NRRL YB-2067 Transcriptome

| PRJNA372884 | ENA

Metschnikowia bicuspidata strain:NRRL YB-4993 | isolate:NRRL YB-4993

Project description:Metschnikowia bicuspidata bicuspidata NRRL YB-4993 transcriptome - YPD

| PRJNA494756 | ENA

Metschnikowia bicuspidata strain:NRRL YB-4993 | isolate:NRRL YB-4993

Project description:Metschnikowia bicuspidata bicuspidata NRRL YB-4993 transcriptome - YPX

| PRJNA494757 | ENA

Changes in transcriptome and translatome upon YB-1 or YB-3 expression in double knockout HEK293T ΔYB-1ΔYB-3 cells

Project description:In this study, we generated transcriptome profiles from HEK293T, HEK293T ΔYB-1ΔYB-3, and HEK293T ΔYB-1ΔYB-3 with the restored expression of YB-1 and/or YB-3. The data are used to explore YB-1 and YB-3 influence on transcriptome and translatome and their functional interchangeability in transcription and translation.

2024-01-18 | GSE249895 | GEO

YB-1 RIP.chip - Co-immunoprecipitation of RNAs present in YB-1 containing RNP granules

Project description:The transcription factor and RNA-interacting Y-box binding protein-1 (YB-1 protein, YBX1 gene) has gained interest as a prognostic biomarker and therapeutic target in various malignancies including prostate cancer. Using a custom prostate-cancer-focussed microarray platform, we have established a transcriptome-wide profile of YB-1 target transcripts in the androgen sensitive prostate cancer cell line LNCaP, including RNAs regulated by YB-1 at the post-transcriptional level; under androgen deprived culture conditions and following stimulation with dihydrotestosterone (DHT).

2022-01-17 | GSE125337 | GEO

Transcriptome (RNA-Seq), translatome (Ribo-Seq), and YB-1/YB-3-bound mRNAs (RIP-Seq) of HEK293T, HEK293TdeltaYB-1, and HEK293T+HA-YB-1 cells

Project description:We present results of RNA-Seq, Ribo-Seq, and RIP-Seq (YB-1, YB-3) experiments performed in HEK293T cells, as well as in HEK293T cells with YB-1 knockout and overexpression. The data shows YB-1 function as a global translation inhibitor and YB-3 ability to substitute YB-1 in its function in YB-1 knockout mutant.

2020-01-08 | GSE130781 | GEO

Trichomonascus petasosporus strain:YB-2093

Project description:Trichomonascus petasosporus NRRL YB-2093 Standard Draft genome sequencing

| PRJNA332934 | ENA

YB-1 knock.down - siRNA driven YBX1 knock.down

2022-01-17 | GSE125339 | GEO