Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Arabidopsis thaliana

ABSTRACT: Comparative transcriptional profiling of Arabidopsis yda11 mutant and wild-type plants after infection with Plectosphaerella cucumerina

OTHER RELATED OMICS DATASETS IN: PXD006988

PROVIDER: PRJNA377634 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Similar Datasets

Comparative transcriptional profiling of Arabidopsis yda11 mutant and wild-type plants after infection with Plectosphaerella cucumerina

Project description:Comparative transcriptomic analysis of Arabidopsis thaliana yda11 plants (in Col-0 background), and wild-type plants (Col-0) non-infected or infected with the necrotrophic fungal pathogen Plectosphaerella cucumerina BMM (PcBMM)

2018-02-19 | GSE95609 | GEO

Comparative transcriptional profiling of Arabidopsis CA-YDA line and wild-type plants after infection with Plectosphaerella cucumerina

Project description:Comparative transcriptomic analysis of Arabidopsis thaliana lines expressing a constitutively active YDA protein (CA-YDA; in La-0 background), and wild-type plants (La-0) non-infected or infected with the necrotrophic fungal pathogen Plectosphaerella cucumerina BMM (PcBMM)

2018-02-19 | GSE79026 | GEO

Transcription profiling by array of Arabidopsis ABA-deficient mutant aba1-6 after infection with Plectosphaerella cucumerina

Project description:Transcription profiling of Arabidopsis ABA-deficient mutant aba1-6 after infection with Plectosphaerella cucumerina

2012-09-30 | E-MEXP-3733 | biostudies-arrayexpress

Arabidopsis thaliana

Project description:Comparative transcriptional profiling of Arabidopsis CA-YDA line and wild-type plants after infection with Plectosphaerella cucumerina

| PRJNA314761 | ENA

Comparative transcriptional profiling of Arabidopsis arr6-3 mutant and wild-type (Col-0) plants mock-treated and after infection with Plectosphaerella cucumerina BMM

Project description:Comparative transcriptional profiling of Arabidopsis arr6-3 mutant and wild-type (Col-0) plants mock-treated and after infection with Plectosphaerella cucumerina BMM

| PRJNA495058 | ENA

Arabidopsis thaliana mutant sr45-1 inflorescence protein TMT-6

Project description:Arabidopsis thaliana mutant sr45-1 has an altered flower shape. sr45 is a splicing regulator. In this study, we examined the proteins from inflorescence of sr45-1 mutant plants and wild-type. Wild type TMT labels: 126, 128, 130. sr45-1 TMT labels: 127, 129, 131.

2019-04-26 | MSV000083728 | MassIVE

Mnase-Seq study of Arabidopsis thaliana mutant chr5

Project description:Comparative study of nuclesome occupancy in Arabidopsis thaliana mutant chr5 and wild type strain.

2019-05-23 | GSE99639 | GEO

Arabidopsis thaliana-Actinacidiphila interaction

Project description:How bacteria from the microbiota modulate the physiology of its host is an important question to address. Previous work revealed that the metabolic status of Arabidopsis thaliana was crucial for the specific recruitment of Streptomycetaceae into the microbiota. Here, the Arabidopsis-Actinacidiphila interaction was further depicted by inoculating axenic Arabidopsis with Actinacidiphila cocklensis DSM 42063 or Actinacidiphila bryophytorum DSM 42138(previously named Streptomyces cocklensis and Streptomyces bryophytorum). We demonstrated that these two bacteria colonize A. thaliana wild-type plants, but their colonization efficiency was reduced in a chs5 mutant with defect in isoprenoid, phenylpropanoids and lipids synthesis. We observed that those bacteria affect the growth of the chs5 mutant but not of the wild-type plants. Using a mass spectrometry-based proteomic approach, we showed a modulation of the Arabidopsis proteome and in particular its components involved in photosynthesis or phytohormone homeostasis or perception by A. cocklensis and A. bryophytorum. This study unveils specific aspects of the Actinacidiphila-Arabidopsis interaction, which implies molecular processes impaired in the chs5 mutant and otherwise at play in the wild-type. More generally, this study highlights complex and distinct molecular interactions between Arabidopsis thaliana and bacteria belonging to the Actinacidiphila genus.

2024-01-29 | PXD041221 | Pride

agb1-1 mutant and Col-0 comparative transcriptomic analysis in a Plectosphaerella cucumerina inoculation

Project description:To elucidate the molecular basis of heterotrimeric G-protein-mediated resistance, we performed a comparative transcriptomic analysis of agb1-1 mutant and wild-type plants upon inoculation with P. cucumerina.

2011-06-01 | E-MTAB-641 | biostudies-arrayexpress

Arabidopsis thaliana young flowers: Wild type vs. sdg2-1 mutant

Project description:Transcriptional profiling in young flowers (stage 8) of Arabidopsis wild type control plants and sdg2-1 mutant is performed using Aligent’s Whole Arabidopsis Gene Expression Microarray (G2519F, V4, 4x44K). A significant number of genes involved in gametophyte development are found differentially regulated in the sdg2-1 mutant.

2010-10-06 | GSE18513 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data