Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Plasmodium falciparum ML-14

ABSTRACT: Plasmodium falciparum genome sequencing project

PROVIDER: PRJNA38059 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR1055183_1.fastq.gz	Fastqsanger.gz
	SRR1055183_2.fastq.gz	Fastqsanger.gz

Items per page:

1 - 2 of 2

Similar Datasets

Plasmodium falciparum

Project description:Plasmodium falciparum transcriptome project

| PRJDA33431 | ENA

Discovery of telomere repeat-binding factor in the malaria parasite Plasmodium falciparum

Project description:ChIP-seq experiments were performed for the putative telomere repeat-binding factor (PfTRF) in the malaria parasite Plasmodium falciparum strain 3D7. The gene encoding this factor (PF3D7_1209300) was endogenously tagged with either a GFP- or a 3xHA-tag and these transgenic parasite lines were used in ChIP-sequencing experiments. Sequencing of the ChIP and input libraries showed enrichment of PfTRF at all telomere-repeat containing chromosome ends (reference genome Plasmodium falciparum 3D7 from PlasmoDB version 6.1) as well as in all upsB var promoters.In addition,PfTRF was enriched at seven additional, intra-chromosomal sites and called in the PfTRF-HA ChIP-seq only. Plasmodium falciparum 3D7 parasites were generated with -GFP or -3xHA C-terminal tagged TRF (PF3D7_1209300). Nuclei were isolated from formaldehyde cross-linked schizont-stage transgenic parasites and used to prepare chromatin. Chromatin immunoprecipitations were performed using mouse anti-GFP (Roche Diagnostics, #11814460001) or rat anti-HA 3F10 (Roche Diagnostics, #12158167001). Sequencing libraries were prepared according to a Plasmodium-optimized library preparation procedure including KAPA polymerase-mediated PCR amplification.

2016-07-15 | E-GEOD-76537 | biostudies-arrayexpress

Plasmodium falciparum 3D7

Project description:Plasmodium falciparum 3D7 genome sequencing project

| PRJNA43541 | ENA

Plasmodium falciparum MaliPS096_E11

Project description:Plasmodium falciparum MaliPS096_E11 genome sequencing project

| PRJNA67491 | ENA

Plasmodium falciparum 87_239

Project description:Plasmodium falciparum 87_239 genome sequencing project

| PRJNA38057 | ENA

Plasmodium falciparum NF54 Transcriptome

Project description:Transcriptomic Analysis of Cultured Sporozoites of P. falciparum RNA-seq reads from each of three developmental stages (2 replicates per sample) were mapped to the reference Plasmodium falciparum genome, and gene expression levels were calculated for each sample.

2013-12-03 | E-GEOD-52867 | biostudies-arrayexpress

Plasmodium falciparum

Project description:Comparative genome sequencing project of Plasmodium falciparum strains

| PRJNA27925 | ENA

Plasmodium falciparum

Project description:Plasmodium falciparum Genome sequencing

| PRJNA262567 | ENA

Plasmodium falciparum

Project description:Plasmodium falciparum Genome sequencing

| PRJNA336113 | ENA

Plasmodium falciparum

Project description:Plasmodium falciparum Genome sequencing