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Impact of CG5694/ova on H3K4me2 and pol II patterns in Drosophila ovaries [ChIP-seq]

ABSTRACT: Impact of CG5694/ova on H3K4me2 and pol II patterns in Drosophila ovaries [ChIP-seq]

PROVIDER: PRJNA414176 | ENA |

REPOSITORIES: ENA

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Impact of CG5694/ova on H3K4me2 and pol II patterns in Drosophila ovaries [ChIP-seq]

Project description:Purpose: To analysis Ova impact on H3K4me2 and pol II patterns in Drosophila ovaries by ChIP-seq Methods: Chromatin Immunoprecipitation to identify H3K4me2 and pol II patterns in Drosophila ovaries Results: Knockdown of Ova increases of H3K4me2 and Pol II in some genomic regions.

2019-01-14 | GSE104923 | GEO

Impact of CG5694/ova in Drosophila ovaries

Project description:Impact of CG5694/ova in Drosophila ovaries

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Impact of depeltion of CG5694/ova on transcription in Drosophila ovaries [miRNA- and RNA-seq]

Project description:Purpose: To analysis Ova impact on transcription in Drosophila ovaries by mRNA-seq and small RNA-seq Methods: mRNA-seq and small RNA-seq of RNA extracted from Drosophila ovaries Results: Ova has no obvious impact on protein coding genes expression or piRNA biogenesis.

2019-01-14 | GSE104924 | GEO

ChIP-Seq analysis of H3K4me2 and Pol II in Tetrahymena

Project description:This study describes the epigenetic profiling of H3K4me2 and Pol II in growth stage of Tetrahymena thermophila.

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Impact of depeltion of CG5694/ova on transcription in Drosophila ovaries [miRNA- and RNA-seq]

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Impact of nuclear Piwi elimination on chromatin state in Drosophila melanogaster ovaries

Project description:The piRNA-interacting Piwi protein is involved in transcriptional silencing of transposable elements in ovaries of D. melanogaster. Here we characterized the genome-wide effect of nuclear Piwi elimination on the presence of the heterochromatic H3K9me3 mark and HP1a, as well as on the transcription-associated mark H3K4me2. Our results demonstrate that a significant increase in the H3K4me2 level upon nuclear Piwi loss is not accompanied by the alterations in H3K9me3 and HP1a levels for several germline-expressed transposons, suggesting that in this case Piwi prevents transcription by a mechanism distinct from H3K9 methylation. We found that the targets of Piwi-dependent chromatin repression are mainly related to the elements that display a higher level of H3K4me2 modification in the absence of silencing, i.e. most actively transcribed elements. We also show that Piwi-guided silencing does not significantly influence the chromatin state of dual-strand piRNA-producing clusters. In addition, host protein-coding gene expression is essentially not affected due to the nuclear Piwi elimination, but we noted an increase in small nuclear spliceosomal RNAs abundance and propose Piwi involvement in their posttranscriptional regulation. Our work reveals new aspects of transposon silencing in Drosophila, indicating that transcription of transposons can underpin their Piwi dependent silencing, while canonical heterochromatin marks are not obligatory for their repression. Examination of histone modifications in ovaries from two different fly lines- piwiNt/piwi2 (mutant) and piwi/+ (wildtype)

2014-05-19 | E-GEOD-56347 | biostudies-arrayexpress

Gene Expression patterns in mouse B16-OVA melanoma tumors

Project description:This laboratory focuses on selectin mediated recruitment during adoptive immunotherapy for metastatic cancer. This study seeks to determine changes in the expression levels of Fucosyltransferases, Selectins, and cytokines in normal and inflamed mouse skin, melanoma tumor tissue of different sizes, and tumor cells grown in culture. Since the ability to treat the tumor effectively is directly related to the size of the tumor, differences in glyco-expression patterns may be of interest. In this study, five groups were hybridized and analyzed using the GLYCOv2 array. Each group was analyzed in triplicate. The groups were: Normal mouse skin, normal mouse skin inflamed by treatment with Oxazolone, B16-OVA melanoma tissue from 6 day tumors, B16-OVA melanoma tissue from 11 day tumors, and B16-OVA grown in cell culture.

2011-02-17 | E-GEOD-27355 | biostudies-arrayexpress

Impact of nuclear Piwi elimination on chromatin state in Drosophila melanogaster ovaries

2014-05-19 | GSE56347 | GEO

Impact of CG5694/ova in Drosophila ovaries

Project description:This SuperSeries is composed of the SubSeries listed below.

2019-01-14 | GSE104925 | GEO

miR-21 OVA Lung

Project description:Lungs from miR-21+/+ and miR-21-/- mice sensitized with OVA/Alum and challenged with either saline or OVA.

2011-08-25 | E-MEXP-3119 | biostudies-arrayexpress