Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Pseudomonas savastanoi pv. savastanoi NCPPB 3335

ABSTRACT: Pseudomonas savastanoi pv. savastanoi NCPPB 3335 Genome sequencing

PROVIDER: PRJNA41887 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Similar Datasets

Pseudomonas savastanoi pv. fraxini strain:NCPPB 1006

Project description:Pseudomonas savastanoi pv. fraxini strain:NCPPB 1006 Genome sequencing and assembly

| PRJNA388451 | ENA

Pseudomonas savastanoi pv. savastanoi

Project description:Pseudomonas savastanoi pv. savastanoi Genome sequencing and assembly

| PRJNA638121 | ENA

GacA reduces virulence and increases competitiveness in planta in the tumorigenic olive pathogen Pseudomonas savastanoi p. savastanoi

Project description:GacS/GacA is a widely distributed two-component system playing an essential role as a key global regulator, although its characterization in phytopathogenic bacteria has been deeply biased, being intensively studied in pathogens of herbaceous plants but barely investigated in pathogens of woody hosts. P. savastanoi pv. savastanoi (Psv) is characterized by inducing tumours in the stem and branches of olive trees. In this work, the model strain Psv NCPPB 3335 and a mutant derivative with a complete deletion of gene gacA were subjected to RNA-Seq analyses in a minimum medium and a medium mimicking in planta conditions, accompanied by RT-qPCR analyses of selected genes and phenotypic assays. These experiments indicated that GacA participates in the regulation of at least 2152 genes in strain NCPPB 3335, representing 37.9 % of the annotated CDSs. GacA also controls the expression of diverse rsm genes, and modulates diverse phenotypes, including motility and resistance to oxidative stresses. As occurs with other P. syringae pathovars of herbaceous plants, GacA regulates the expression of the type III secretion system and cognate effectors. In addition, GacA also regulates the expression of WHOP genes, specifically encoded in P. syringe strains isolated from woody hosts, and genes for the biosynthesis of phytohormones. A gacA mutant of NCPPB 3335 showed increased virulence, producing large immature tumours with high bacterial populations, but showed a significantly reduced competitiveness in planta. Our results further extend the role of the global regulator GacA in the virulence and fitness of a P. syringae pathogen of woody hosts.

2024-02-28 | GSE254022 | GEO

Pseudomonas savastanoi pv. savastanoi strain:PVFi1

Project description:Pseudomonas savastanoi pv. savastanoi strain:PVFi1 Genome sequencing

| PRJNA635552 | ENA

Pseudomonas savastanoi pv. savastanoi strain:PseNe107

Project description:Pseudomonas savastanoi pv. savastanoi strain:PseNe107 Genome sequencing and assembly

| PRJNA274668 | ENA

Pseudomonas savastanoi pv. savastanoi strain:DAPP-PG722

Project description:Pseudomonas savastanoi pv. savastanoi strain:DAPP-PG722 Genome sequencing and assembly

| PRJNA251981 | ENA

HrpL Regulon of Bacterial Pathogen of Woody Host Pseudomonas savastanoi pv. savastanoi NCPPB 3335.

Project description: Not available

| S-EPMC8303149 | biostudies-literature

Pseudomonas savastanoi pv. phaseolicola strain:NPS3121

Project description:Pseudomonas savastanoi pv. phaseolicola strain:NPS3121 Genome sequencing

| PRJNA374678 | ENA

Pseudomonas savastanoi pv. phaseolicola strain:Ps1

Project description:Pseudomonas savastanoi pv. phaseolicola strain:Ps1 Genome sequencing

| PRJNA343443 | ENA

Pseudomonas savastanoi pv. phaseolicola strain:CYL246

Project description:Pseudomonas savastanoi pv. phaseolicola strain:CYL246 Genome sequencing

| PRJNA374791 | ENA

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data