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Maternal pluripotency factors initiate extensive chromatin remodelling to predefine first response to inductive signals

ABSTRACT: Maternal pluripotency factors initiate extensive chromatin remodelling to predefine first response to inductive signals

PROVIDER: PRJNA450396 | ENA |

REPOSITORIES: ENA

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Maternal pluripotency factors initiate extensive chromatin remodelling to predefine first response to inductive signals

Project description:Embryonic development yields many different cell types in response to just a few families of inductive signals. The property of signal-receiving cells that determines how they respond to inductive signals is known as competence, and it differs in different cell types. Here, we explore the ways in which maternal factors modify chromatin to specify initial competence in the frog Xenopus tropicalis. We identify early-engaged regulatory DNA sequences, and infer from them critical activators of the zygotic genome. Of these, we show that the pioneering activity of the maternal pluripotency factors Pou5f3 and Sox3 determines competence for germ layer formation by extensively remodelling compacted chromatin before the onset of inductive signalling. This remodelling includes the opening and marking of thousands of regulatory elements, extensive chromatin looping, and the co-recruitment of signal-mediating transcription factors. Our work identifies significant developmental principles that inform our understanding of how pluripotent stem cells interpret inductive signals.

2019-04-16 | GSE113186 | GEO

Maternal pluripotency factors initiate extensive chromatin remodelling to predefine first response to inductive signals.

Project description: Not available

| S-EPMC6753111 | biostudies-literature

Liver-derived signals sequentially reprogram myeloid enhancers to initiate and maintain Kupffer cell identity

Project description:Liver-derived signals sequentially reprogram myeloid enhancers to initiate and maintain Kupffer cell identity

| PRJNA528430 | ENA

Extravillous trophoblast and endothelial cell crosstalk mediates leukocyte infiltration to the early remodelling decidual spiral arteriole wall

Project description:Decidual spiral arteriole (SpA) remodelling is essential to ensure optimal uteroplacental blood flow during human pregnancy. Decidual uterine natural killer cells and macrophages infiltrate the SpA and are proposed to initiate remodelling before colonisation by extravillous trophoblasts. Microarrays were used to measure the effect of extravillous trophoblasts conditioned medium on the transcriptome of human uterine microvascular endothelial cells.

2017-10-16 | E-MTAB-5467 | biostudies-arrayexpress

Transcriptional profiling of inductive prostatic mesenchyme

Project description:Background: The mesenchymal compartment plays a key role in organogenesis and cells within the mesenchyme/stroma are a source of potent molecules that control epithelia during development and tumourigenesis. We have used Serial Analysis of Gene Expression (SAGE) to profile a key subset of prostatic mesenchyme that regulates prostate development and is enriched for growth-regulatory molecules. Results: SAGE libraries were made of prostatic inductive mesenchyme (VMP) and the complete prostatic rudiment (including inductive mesenchyme, epithelium and smooth muscle; VSU). By comparing these two SAGE libraries we generated a list of 219 transcripts that were enriched or specific to inductive mesenchyme and which may act as mesenchymal regulators of organogenesis and tumourigenesis. Conclusions: The use of a precisely defined subset of cells, and a back-comparison approach, allowed us to identify rare mRNAs that might be overlooked using other approaches. Keywords: SAGE, gene profiling Two SAGE libraries were prepared and compared to each other. The VMP forms a subset of the VSU.

2007-12-20 | E-GEOD-7899 | biostudies-arrayexpress

Transcriptional profiling of inductive prostatic mesenchyme

2007-12-21 | GSE7899 | GEO

Liver-derived signals sequentially reprogram myeloid enhancers to initiate and maintain Kupffer cell identity (RNA-Seq)

Project description:Liver-derived signals sequentially reprogram myeloid enhancers to initiate and maintain Kupffer cell identity (RNA-Seq)

| PRJNA528435 | ENA

Liver-derived signals sequentially reprogram myeloid enhancers to initiate and maintain Kupffer cell identity (ChIP-Seq)

Project description:Liver-derived signals sequentially reprogram myeloid enhancers to initiate and maintain Kupffer cell identity (ChIP-Seq)

| PRJNA528437 | ENA

Liver-derived signals sequentially reprogram myeloid enhancers to initiate and maintain Kupffer cell identity (ATAC-Seq)

Project description:Liver-derived signals sequentially reprogram myeloid enhancers to initiate and maintain Kupffer cell identity (ATAC-Seq)

| PRJNA528436 | ENA

EHF and CDX1 co-operate to drive extensive transcriptional reprogramming and chromatin remodelling in CRC cells [ATAC-seq]

Project description:EHF and CDX1 co-operate to drive differentation of CRC cells. To identify the change in chromatin remodelling induced by these transcription factors, EHF and CDX1 were stably re-expressed in poorly differentiated HCT116 CRC cells and ATAC-seq analysis performed.

2022-11-02 | GSE202072 | GEO

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