Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Bifidobacterium pseudocatenulatum D2CA

ABSTRACT: Bifidobacterium pseudocatenulatum D2CA genome sequencing project

PROVIDER: PRJNA45965 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Similar Datasets

RNA sequencing of Bifidobacterium pseudocatenulatum MP80 grown on Lactose 2'-FL and LNFP-1

Project description:RNA sequencing revolutionized the bacterial gene expression analysis. The objective of this study was to identify the genes involved in metabolism of 2'-FL and LNFP1 in Bifidobacterium pseudocatenulatum MP80. We have obtained a list of genes upregulated in Bifidobacterium pseudocatenulatum MP80 when it is grown in 2% 2'-FL and LNFP1. Lactose grown samples were used as the control.

2021-05-31 | GSE175820 | GEO

Bifidobacterium pseudocatenulatum

Project description:Bifidobacterium pseudocatenulatum Genome sequencing and assembly

| PRJNA705858 | ENA

Bifidobacterium pseudocatenulatum

Project description:Bifidobacterium pseudocatenulatum Genome sequencing and assembly

| PRJNA577207 | ENA

Bifidobacterium pseudocatenulatum

Project description:Bifidobacterium pseudocatenulatum overview

| PRJNA37437 | ENA

Bifidobacterium pseudocatenulatum IPLA36007

Project description:Bifidobacterium pseudocatenulatum IPLA36007 Genome sequencing and assembly

| PRJNA236475 | ENA

Bifidobacterium pseudocatenulatum strain:JCLA3

Project description:Bifidobacterium pseudocatenulatum strain: JCLA3 Genome sequencing

| PRJNA795522 | ENA

Bifidobacterium pseudocatenulatum strain:LI09

Project description:Bifidobacterium pseudocatenulatum Genome sequencing and assembly

| PRJNA344539 | ENA

Bifidobacterium pseudocatenulatum strain:Bif4

Project description:Bifidobacterium pseudocatenulatum Bif4 Genome sequencing and assembly

| PRJNA451351 | ENA

Bifidobacterium pseudocatenulatum strain:12

Project description:Bifidobacterium pseudocatenulatum 12 Genome sequencing and assembly

| PRJNA420744 | ENA

Genomic diversity of Bifidobacterium pseudocatenulatum group

Project description:Bifidobacteria have been described as a key component of the human gut microbiota, and recently significant efforts have been made to investigate their genome contents and assess the genetic variability at inter- and intra-species level. In the current work we investigated genome diversity among representatives of bifidobacterial species, i.e., Bifidobacterium pseudocatenulatum. These analyses were performed with comparative genomic hybridization (CGH) experiments and they revealed the existence of a strictly conserved set of 685 gene families. Furthermore, CGH analyses showed that genetic regions of diversity included mobile elements and putative genomic life-style adaptation islands, such as loci that encode pili and capsular polysaccharides, and genes involved in carbohydrate metabolism. CGH analysis was performed with microarrays that were based on the genome sequences of Bifidobacteriapseudocatenulatum DSM20438 (ABXX00000000.2). A total of 39,249 probes of 35 bp in length were designed using OligoArray 2.1 software. Oligos were synthesized in triplicate on a 2 × 40-k CombiMatrix array (CombiMatrix, Mulkiteo, USA). Replicates were distributed on the chip at random, non-adjacent positions. A set of 74 negative control probes designed on phage and plant sequences was also included on the chip. Seventeen micrograms of purified genomic DNA was labeled with Cy5-ULS using the Kreatech ULS array CGH Labeling kit (Kreatech Diagnostics) according to the supplier’s instructions. Hybridization of labeled test DNA to these microarrays was performed according to CombiMatrix protocols.

2013-02-06 | GSE39047 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data