Project description:Experimentally mapped transcriptome structure of Methanococcus maripaludis S2 by hybridizing total RNA (including RNA species <200 nt) to genome-wide high-density tiling arrays (60 mer probes tiled every 14 nt). Methanococcus maripaludis MM901, a wild type Methanococcus maripaludis S2 with an in frame deletion of the uracil phosphoribosyltransferase gene (Proc. Natl. Acad. Sci. U S A 107: 11050-11055) growth curve experiments were conducted in batch culture. Reference samples were cultured at mid-log phase (OD660 = 0.804). Eight samples were collected that spanned the key phases of the growth curve. Total RNA from samples of growth curve and reference were directly labeled with Cy3 or Cy5, and were hybridized to the tiling array. Dye-flip experiments were done for each sample. Log ratios were calculated for each probe (growth curve sample/reference). Transcriptome browser is available at http://baliga.systemsbiology.net/enigma/.

2011-06-27 | E-GEOD-26777 | biostudies-arrayexpress

Methanococcus maripaludis S2

Project description:Methanococcus maripaludis S2 growth curve, tiling arrays

| PRJNA142125 | ENA

Methanococcus maripaludis S2

Project description:Coculture of Desulfovibrio vulgaris Hildenborough and Methanococcus maripaludis

| PRJNA144185 | ENA

Methanococcus maripaludis S2

Project description:Steady-state samples of Methanococcus maripaludis MM901:del_mtd (MMP0372)

| PRJNA179319 | ENA

Methanococcus maripaludis S2

Project description:Steady-state samples of Methanococcus maripaludis MM901:del_frcA (MMP0820)

| PRJNA179228 | ENA

Methanococcus maripaludis S2

Project description:Steady-state samples of Methanococcus maripaludis MM901:del_fruA (MMP1382)-del_frcA (MMP0820)

| PRJNA179318 | ENA

Coculture of Desulfovibrio vulgaris Hildenborough and Methanococcus maripaludis

Project description:Using data from microarray experiments we investigated a coculture of D. vulgaris Hildenborough and Methanococcus maripaludis.

2011-11-01 | GSE30831 | GEO

Steady-state samples of Methanococcus maripaludis MM901:del_mtd (MMP0372)

Project description:Effects of mtd (MMP0372) on physiology and regulation of methanogenesis in Methanococcus maripaludis

2013-09-16 | GSE42123 | GEO