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Expression data from patient-derived primary glioblastoma cell lines

ABSTRACT: Expression data from patient-derived primary glioblastoma cell lines

PROVIDER: PRJNA472944 | ENA |

REPOSITORIES: ENA

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Expression data from patient-derived primary glioblastoma cell lines

Project description:Genetic alterations that give rise to tumorigenesis result in altered epigenetic and gene expression profiles. We sought to identify and better understand potential consequences of MTAP deletion in glioblastoma by examining gene expression profiles of MTAP deleted and MTAP WT GBM cell lines. MTAP deletion results in accumulation of the abberant metabolite, MTA, with potential consequences to epigenetic regulation and signal transduction. We also examined the cellular response (gene expression) to purine deprivation with L-Alanosine treamment

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Project description:We compared a large panel of human glioblastoma stem-like (GS) cell lines, corresponding primary tumors and conventional glioma cell lines to identify cell lines that preserve the transcriptome of human glioblastomas most closely, thereby allowing identification of shared therapeutic targets. We used Affymetrix HG-U133 Plus 2.0 microarrays to compare human glioblastoma stem-like (GS) cell lines, corresponding primary tumors and conventional glioma cell lines.

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Epigenome analysis of IDH1 mutant and IDH1/2 wild-type patient derived glioblastoma tumorsphere lines.

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2015-09-22 | E-GEOD-73270 | biostudies-arrayexpress

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Expression data from glioblastoma derived sphere lines, adherent cell lines and their original glioblastoma tumor

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Phenotypical states modulate sensitivity and transcriptional reprogramming in patient-derived glioblastoma cells in response to temozolomide and radiation therapy. [array]

Project description:Genome wide DNA methylation profiling of patient-derived glioblastoma cells cultured as neurospheres or FBS differentited cells. The Illumina Infinium 450k Human DNA methylation Beadchip was used to obtain DNA methylation profiles across approximately 450,000 CpGs in glioblastoma CSCs and serum differentiated cells treated with 4 Gy ionizing radiation or IC30 concentration of temozolomide as well as vehicle control samples. Samples included 3 technical replicates in each treatment group for 2 primary glioblastoma cell lines.

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Expression data from glioblastoma derived sphere lines, adherent cell lines and their original glioblastoma tumor

Project description:Expression data from glioblastoma derived sphere lines, adherent cell lines and their original glioblastoma tumor

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Gene expression profiling of patient-derived glioblastoma stem cell cultures

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2018-06-26 | E-MTAB-6408 | biostudies-arrayexpress

Gene expression analysis of patient (HN137) primary and metastatic tumor derived cell lines

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