Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Clavibacter michiganensis subsp. michiganensis strain:CFBP6885

ABSTRACT: Genome sequencing of Clavibacter michiganensis subsp. michiganensis strain CFBP6885

PROVIDER: PRJNA476158 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Similar Datasets

Proteogenomic study of Clavibacter michiganensis subsp. michiganensis strain NCPPB382

Project description:Clavibacter michiganensis subsp. michiganensis is an important Gram-positive phytopathogenic bacteria that causes bacterial wilt and canker in tomato. The genome of the type strain, NCPPB382, has been sequenced and annotated, however comparative genomics suggests that certain regions are under- or misannotated. In order to improve the genome annotation, we have undertaken a proteogenomic study of this important pathogen. Samples were grown in culture and the proteome of the pellet and supernatant were analyzed separately using shotgun HPLC-MS/MS. These proteomics datasets were analyzed and a number of missing gene were found and a number of existing gene calls were modified.

2019-01-31 | PXD006787 | Pride

Transcriptome analysis of Clavibacter michiganensis subsp. michiganensis infected tomato seedlings

Project description:The gram- positive bacterial pathogen Clavibacter michiganensis subsp. michiganensis (Cmm) causes huge economic losses by infecting tomato plants worldwide. Cmm can be spread by contaminated seeds and transplants, penetrating the plant through natural openings or wounds and is transferred through the plant xylem. While in recent years significant progress has been made to elucidate plant responses to pathogenic gram-negative bacteria by gene expression studies, the molecular mechanisms that lead to disease symptoms caused by gram-positive bacteria like Cmm remain elusive. An indigenous virulent Cmm strain isolated from a farm crop of Pomodoro tomatoes in southern Greece was used for the infection of EKSTASIS F1 hybrid tomato seedlings. Here, we present the results of a deep RNA- sequencing (RNA-seq) analysis performed to characterize the dynamic expression profile of tomato genes upon Cmm infection.

2021-08-10 | GSE160971 | GEO

Clavibacter michiganensis subsp. michiganensis strain:1217

Project description:Clavibacter michiganensis subsp. michiganensis strain:1217 Genome sequencing

| PRJNA612743 | ENA

Clavibacter michiganensis subsp. michiganensis strain:NZ5026

Project description:Genome sequencing of Clavibacter michiganensis subsp. michiganensis strain NZ5026

| PRJNA476167 | ENA

Clavibacter michiganensis subsp. michiganensis strain:CFBP2494

Project description:Genome sequencing of Clavibacter michiganensis subsp. michiganensis strain CFBP2494

| PRJNA476172 | ENA

Clavibacter michiganensis subsp. michiganensis strain:CFBP2500

Project description:Genome sequencing of Clavibacter michiganensis subsp. michiganensis strain CFBP2500

| PRJNA476173 | ENA

Clavibacter michiganensis subsp. michiganensis strain:CFBP5842

Project description:Genome sequencing of Clavibacter michiganensis subsp. michiganensis strain CFBP5842

| PRJNA476174 | ENA

Clavibacter michiganensis subsp. michiganensis strain:CFBP7312

Project description:Genome sequencing of Clavibacter michiganensis subsp. michiganensis strain CFBP7312

| PRJNA476177 | ENA

Clavibacter michiganensis subsp. michiganensis strain:ARZ28

Project description:Genome sequencing of Clavibacter michiganensis subsp. michiganensis strain ARZ28

| PRJNA476178 | ENA

Clavibacter michiganensis subsp. michiganensis strain:CFBP7314

Project description:Genome sequencing of Clavibacter michiganensis subsp. michiganensis strain CFBP7314

| PRJNA476159 | ENA

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data