Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Light enhances growth in non-phototropic Actinobacteria (Aurantimicrobium sp. MWH-Mo1)

ABSTRACT: Light enhances growth in non-phototropic Actinobacteria (Aurantimicrobium sp. MWH-Mo1)

PROVIDER: PRJNA479963 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Similar Datasets

Light enhances growth in non-phototropic Actinobacteria (Aurantimicrobium sp. MWH-Mo1)

Project description:Light is a source of energy and an environmental cue that is available in excess in most surface environments. In prokaryotic systems, conversion of light to energy by photoautotrophs and photoheterotrophs is well understood, but the conversion of light to information and the cellular response to that information has been characterized in only a few species. Our goal was to explore the response of freshwater Actinobacteria, which are ubiquitous in illuminated aquatic environments, to light. We found that Actinobacteria without functional photosystems grow faster in the light, likely because sugar transport and metabolism are upregulated in the light, while protein synthesis is upregulated in the dark. Based on the action spectrum of the growth effect, and comparisons of the genomes of three Actinobacteria with this growth rate phenotype, we propose that the photosensor in these strains is a putative CryB-type cryptochrome. The ability to sense light and upregulate carbohydrate transport during the day could allow these cells to coordinate their time of maximum organic carbon uptake with the time of maximum organic carbon release by primary producers.

2018-07-07 | GSE116705 | GEO

Aurantimicrobium photophilum strain:MWH-Mo1

Project description:Aurantimicrobium photophilum strain:MWH-Mo1 Genome sequencing and assembly

| PRJNA295474 | ENA

Aurantimicrobium sp. Mo1

Project description:Aurantimicrobium sp. Mo1 transcriptome - MW1 - Mo1_15m_light

| PRJNA500877 | ENA

Aurantimicrobium sp. Mo1

Project description:Aurantimicrobium sp. Mo1 transcriptome - MW2 - Mo1_1h_light

| PRJNA500878 | ENA

Aurantimicrobium sp. Mo1

Project description:Aurantimicrobium sp. Mo1 transcriptome - MX2 - Mo1_1h_light

| PRJNA500885 | ENA

Aurantimicrobium sp. Mo1

Project description:Aurantimicrobium sp. Mo1 transcriptome - MX3 - Mo1_6h_light

| PRJNA500886 | ENA

Aurantimicrobium sp. Mo1

Project description:Aurantimicrobium sp. Mo1 transcriptome - MX4 - Mo1_15m_dark

| PRJNA500887 | ENA

Aurantimicrobium sp. Mo1

Project description:Aurantimicrobium sp. Mo1 transcriptome - MX5 - Mo1_1h_dark

| PRJNA500888 | ENA

Aurantimicrobium sp. Mo1

Project description:Aurantimicrobium sp. Mo1 transcriptome - MY2 - Mo1_1h_light

| PRJNA500892 | ENA

Aurantimicrobium sp. Mo1

Project description:Aurantimicrobium sp. Mo1 transcriptome - MY3 - Mo1_6h_light

| PRJNA500893 | ENA

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data