Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

RNAseq in NMe wild type and NMe GATA site 1 and 2 homozygous mutant DN3 thymocytes

ABSTRACT: RNAseq in NMe wild type and NMe GATA site 1 and 2 homozygous mutant DN3 thymocytes

PROVIDER: PRJNA482314 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Similar Datasets

RNAseq in NMe wild type and NMe GATA site 1 and 2 homozygous mutant DN3 thymocytes

Project description:The NOTCH1-driven MYC enhancer (NMe) is essential for T cell development, transformation and the development of acute lymphoblastic leukemia. Here we analyze by RNAseq the gene expression profile of DN3 thymocytes from NMe wild type and NMe GATA site 1 and 2 (GS1+2) homozygous mutant mice. GSEA analysis show a significant enrichment of MYC signature genes, consistent with a deficient function of NMe in GATA site 1 and 2 homozygous mutant thymocytes.

2019-08-01 | GSE117483 | GEO

ATACseq in NMe wild type and NMe GATA site 1 and 2 homozygous mutant DN3 thymocytes

Project description:The NOTCH1-driven MYC enhancer (NMe) is essential for T cell development, transformation and the development of acute lymphoblastic leukemia. Here we analyze chromatin accessibility by ATACseq in DN3 thymocytes and Notch-induced TALL blasts from NMe wild type and NMe GATA site 1 and 2 (GS1+2) homozygous mutant mice.

2019-08-01 | GSE117573 | GEO

ATACseq in NMe wild type and NMe GATA site 1 and 2 homozygous mutant DN3 thymocytes

Project description:ATACseq in NMe wild type and NMe GATA site 1 and 2 homozygous mutant DN3 thymocytes

| PRJNA482545 | ENA

Single-cell RNAseq in NMe wild type and NMe GATA site 1 and 2 homozygous thymocytes

2021-07-18 | GSE117412 | GEO

Role of GATA in DN3 stage thymocytes

Project description:Role of GATA in DN3 stage thymocytes

| PRJNA475907 | ENA

Chromatin accessibility and transcriptomic profiling in NMe Gata-site double mutant mouse DN3 Thymocytes

Project description:Chromatin accessibility and transcriptomic profiling in NMe Gata-site double mutant mouse DN3 Thymocytes

| PRJNA482677 | ENA

Single-cell RNAseq in NMe wild type and NMe GATA site 1 and 2 homozygous thymocytes

Project description:Single-cell RNAseq in NMe wild type and NMe GATA site 1 and 2 homozygous thymocytes

| PRJNA482008 | ENA

Role of GATA in DN3 stage thymocytes

Project description:RNA-seq in DN3 stage thymocytes isolated from wild type and Gata3 hypomorphic mutant mouse

2018-06-14 | GSE115739 | GEO

Role of Tcf-1 (Tcf7) in DN3 thymocytes

Project description:Comparison of wild-type and Tcf-1-deficient DN3 thymocytes

2021-11-01 | GSE93346 | GEO

Identification of the molecular targets of miR-185 in DN3 stage thymocytes

Project description:T cell-specific overexpression of miR-185 caused a developmental block at DN3 stage of thymopoiesis. DN3 stage thymocytes were sorted from the wild type (C57BL/6) and miR-185 Tg mice, followed by total RNA isolation.

2013-10-28 | E-GEOD-49057 | biostudies-arrayexpress

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data