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Clavibacter michiganensis subsp. californiensis strain:CFBP 8216

ABSTRACT: Clavibacter michiganensis subsp. californiensis strain:CFBP 8216 Genome sequencing and assembly

PROVIDER: PRJNA485849 | ENA |

REPOSITORIES: ENA

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Transcriptome analysis of Clavibacter michiganensis subsp. michiganensis infected tomato seedlings

Project description:The gram- positive bacterial pathogen Clavibacter michiganensis subsp. michiganensis (Cmm) causes huge economic losses by infecting tomato plants worldwide. Cmm can be spread by contaminated seeds and transplants, penetrating the plant through natural openings or wounds and is transferred through the plant xylem. While in recent years significant progress has been made to elucidate plant responses to pathogenic gram-negative bacteria by gene expression studies, the molecular mechanisms that lead to disease symptoms caused by gram-positive bacteria like Cmm remain elusive. An indigenous virulent Cmm strain isolated from a farm crop of Pomodoro tomatoes in southern Greece was used for the infection of EKSTASIS F1 hybrid tomato seedlings. Here, we present the results of a deep RNA- sequencing (RNA-seq) analysis performed to characterize the dynamic expression profile of tomato genes upon Cmm infection.

2021-08-10 | GSE160971 | GEO

Proteogenomic study of Clavibacter michiganensis subsp. michiganensis strain NCPPB382

Project description:Clavibacter michiganensis subsp. michiganensis is an important Gram-positive phytopathogenic bacteria that causes bacterial wilt and canker in tomato. The genome of the type strain, NCPPB382, has been sequenced and annotated, however comparative genomics suggests that certain regions are under- or misannotated. In order to improve the genome annotation, we have undertaken a proteogenomic study of this important pathogen. Samples were grown in culture and the proteome of the pellet and supernatant were analyzed separately using shotgun HPLC-MS/MS. These proteomics datasets were analyzed and a number of missing gene were found and a number of existing gene calls were modified.

2019-01-31 | PXD006787 | Pride

Clavibacter michiganensis subsp. californiensis strain:CFBP 8216 (=ATCC BAA-2691 =C55)

Project description:Clavibacter michiganensis subsp. californiensis strain:CFBP 8216 (=ATCC BAA-2691 =C55) Genome sequencing

| PRJNA544536 | ENA

Clavibacter michiganensis subsp. michiganensis strain:CFBP 4999

Project description:Clavibacter michiganensis subsp. michiganensis CFBP4999 Genome sequencing and assembly

| PRJNA497391 | ENA

Clavibacter michiganensis subsp. nebraskensis strain:CFBP 7577

Project description:Clavibacter michiganensis subsp. nebraskensis strain:CFBP 7577 Genome sequencing and assembly

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Clavibacter michiganensis subsp. chilensis strain:CFBP 8217

Project description:Clavibacter michiganensis subsp. chilensis strain:CFBP 8217 Genome sequencing and assembly

| PRJNA485850 | ENA

Clavibacter michiganensis subsp. insidiosus strain:CFBP 1195

Project description:Clavibacter michiganensis subsp. insidiosus strain:CFBP 1195 Genome sequencing and assembly

| PRJNA485843 | ENA

Clavibacter michiganensis subsp. insidiosus strain:CFBP 6488

Project description:Clavibacter michiganensis subsp. insidiosus strain:CFBP 6488 Genome sequencing and assembly

| PRJNA485844 | ENA

Clavibacter michiganensis subsp. insidiosus strain:CFBP 2404

Project description:Clavibacter michiganensis subsp. insidiosus strain:CFBP 2404 Genome sequencing and assembly

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Clavibacter michiganensis subsp. phaseoli strain:CFBP 8627

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