Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Siminovitchia terrae strain:LMG 29736

ABSTRACT: Siminovitchia terrae strain:LMG 29736 Genome sequencing and assembly

PROVIDER: PRJNA491457 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Similar Datasets

Roseomonas terrae strain:LMG 31159

Project description:Roseomonas terrae LMG 31159 Genome sequencing and assembly

| PRJNA603472 | ENA

Transcriptome profiling reveals the EanI/R quorum sensing regulon in Pantoea ananatis LMG 2665T

Project description:Background: Pantoea ananatis LMG 2665T synthesizes and utilizes acyl homoserine lactones (AHLs) for signaling. In this strain, short chain AHLs (C4 to C8) are produced by the EanI/R quorum sensing (QS) system that is involved in pathogenicity and biofilm formation. The complete set of genes regulated by the EanI/R system in P. ananatis LMG 2665T is still not fully known. In the present study, RNA-seq was used to analyze the transcriptome profiles controlled by the EanI/R system in this strain by comparing the wild type strain and its QS mutant 2665T ean∆I/R during lag and log stages. The RNA seq data was validated by RT qPCR. Results: The results showed that the EanI/R regulon in P. ananatis LMG 2665T comprised 144 genes, constituting 3.3% of the whole transcriptome under the experimental conditions in this study. The majority of genes regulated by the EanI/R system included genes for flagella assembly, bacterial chemotaxis, pyruvate metabolism, two component system, metabolic pathways, microbial metabolism and biosynthesis of secondary metabolites. Conclusions: This is the first study to identify the EanI/R QS regulon in P. ananatis LMG 2665T. Functional analysis of genes regulated the EanI/R system in LMG 2665T could help unveil genes that play a vital role in pathogenesis and survival strategies of this pathogen.

2018-10-31 | GSE87207 | GEO

Taxonomic study of Pandoraea terrae LMG 30175T

Project description:Taxonomic study of Pandoraea terrae LMG 30175T

| PRJEB30813 | ENA

Aquabacterium terrae strain:S2

Project description:Aquabacterium terrae strain:S2 Genome sequencing and assembly

| PRJNA630374 | ENA

Arenimonas terrae strain:R29

Project description:Arenimonas terrae strain:R29 Genome sequencing and assembly

| PRJNA525910 | ENA

Geomonas terrae strain:Red111

Project description:Geomonas terrae strain:Red111 Genome sequencing and assembly