Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Bradyrhizobium vignae strain:LMG 28791

ABSTRACT: Bradyrhizobium vignae strain:LMG 28791 Genome sequencing and assembly

PROVIDER: PRJNA497496 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Similar Datasets

Bradyrhizobium vignae

Project description:Bradyrhizobium vignae overview

| PRJNA702858 | ENA

Bradyrhizobium vignae strain:ISRA400

Project description:Bradyrhizobium vignae strain:ISRA400 Genome sequencing and assembly

| PRJNA702635 | ENA

Transcriptome profiling reveals the EanI/R quorum sensing regulon in Pantoea ananatis LMG 2665T

Project description:Background: Pantoea ananatis LMG 2665T synthesizes and utilizes acyl homoserine lactones (AHLs) for signaling. In this strain, short chain AHLs (C4 to C8) are produced by the EanI/R quorum sensing (QS) system that is involved in pathogenicity and biofilm formation. The complete set of genes regulated by the EanI/R system in P. ananatis LMG 2665T is still not fully known. In the present study, RNA-seq was used to analyze the transcriptome profiles controlled by the EanI/R system in this strain by comparing the wild type strain and its QS mutant 2665T ean∆I/R during lag and log stages. The RNA seq data was validated by RT qPCR. Results: The results showed that the EanI/R regulon in P. ananatis LMG 2665T comprised 144 genes, constituting 3.3% of the whole transcriptome under the experimental conditions in this study. The majority of genes regulated by the EanI/R system included genes for flagella assembly, bacterial chemotaxis, pyruvate metabolism, two component system, metabolic pathways, microbial metabolism and biosynthesis of secondary metabolites. Conclusions: This is the first study to identify the EanI/R QS regulon in P. ananatis LMG 2665T. Functional analysis of genes regulated the EanI/R system in LMG 2665T could help unveil genes that play a vital role in pathogenesis and survival strategies of this pathogen.

2018-10-31 | GSE87207 | GEO

Comparison of Bradyrhizobium japonicum parent strain LO with irr mutant strain LODTM5

Project description:The purpose of the study is to identify Irr-responsive genes in the bacterium Bradyrhizobium japonicum. Parent strain LO was compared to irr mutant strain LODTM5 by whole genome microarray analysis. Both cell types were grown in iron-limited media. Keywords: Comparison of B. japonicum wild type and mutant cells

2006-03-15 | GSE4155 | GEO

Bradyrhizobium sp. LMG 8443

Project description:Bradyrhizobium sp. LMG 8443 Genome sequencing and assembly

| PRJNA631138 | ENA

Bradyrhizobium arachidis strain:LMG 26795

Project description:Bradyrhizobium arachidis LMG 26795 genome sequencing

| PRJNA323241 | ENA

Microvirga vignae strain:BR3299

Project description:Microvirga vignae strain:BR3299 Genome sequencing and assembly

| PRJNA283551 | ENA

Phytophthora vignae

Project description:Phytophthora vignae Genome sequencing and assembly

| PRJNA626502 | ENA

Comparison of Bradyrhizobium japonicum parent strain LO grown under low or high iron conditions

Project description:The purpose of the study is to identify iron-responsive genes in the bacterium Bradyrhizobium japonicum. Parent strain LO was grown under iron limitation or under iron sufficiency and compared to each other by whole genome microarray analysis. Keywords: Comparison of cells grown under low or high iron conditons

2006-03-15 | GSE4143 | GEO

Neorhizobium vignae strain:CCBAU 05176

Project description:Neorhizobium vignae strain:CCBAU 05176 Genome sequencing and assembly

| PRJNA251791 | ENA