Project description:Indole-3-acetic acid (IAA), knows as common plant hormone, is one of the most distributed indole derivatives in the environment. A novel strain, which was able to use IAA as sole source of carbon and nitrogen, was isolated from farm soil, identified and classified as Pseudomonas composti LY1 based on 16S rRNA sequence and genome analysis. The optimal growth conditions for LY1 with IAA are characterized. Proteome profile of strain LY1 to IAA and citrate were analyzed and compared using label free strategy with LC-MS/MS.

2021-09-08 | PXD014968 | Pride

Pseudomonas composti strain:LY1

Project description:Pseudomonas composti strain:LY1 Genome sequencing and assembly

| PRJNA312461 | ENA

Pseudomonas composti strain:AD6

Project description:Pseudomonas composti strain:AD6 Genome sequencing and assembly

| PRJNA236303 | ENA

Xylanibacillus composti strain:K13

Project description:Xylanibacillus composti strain:K13 Genome sequencing and assembly

| PRJNA481431 | ENA

Pseudoxanthomonas composti strain:GSS15

Project description:Pseudoxanthomonas composti strain:GSS15 Genome sequencing and assembly

| PRJNA513434 | ENA

Transcriptomic analyses of Lysinibacillus varians GY32 respiring with electrode or oxygen [RNA-seq G]

Project description:Lysinibacillus varians GY32 is a filamentous bacteria that can generate electricity in microbial fuel cells. To find potential genes participating in the electron transfer to electrode of Lysinibacillus varians GY32, we compared the gene expression profiles of this bacteria with yeast extract as electron donor and two electron acceptors, i.e. oxygen and electrode in microbial fuel cells. The results showed that several cytochrome c genes might play specific roles in the extracellular electron transfer to electrode in this strain.

2021-01-29 | GSE165754 | GEO

Transcriptomic analyses of Lysinibacillus varians GY32 respiring with electrode or oxygen [RNA-seq K]

Project description:Lysinibacillus varians GY32 is a filamentous bacteria that can generate electricity in microbial fuel cells. To find potential genes participating in the electron transfer to electrode of Lysinibacillus varians GY32, we compared the gene expression profiles of this bacteria with acetate as electron donor and two electron acceptors, i.e. oxygen and electrode in microbial fuel cells. The results showed that several cytochrome c genes might play specific roles in the extracellular electron transfer to electrode in this strain.

2021-01-29 | GSE165753 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data