Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Aliarcobacter lanthieri strain:LMG 28516

ABSTRACT: Aliarcobacter lanthieri strain:LMG 28516 Genome sequencing and assembly

PROVIDER: PRJNA521382 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Similar Datasets

Aliarcobacter lanthieri strain:AF1430

Project description:Aliarcobacter lanthieri strain:AF1430 Genome sequencing and assembly

| PRJNA235327 | ENA

Aliarcobacter lanthieri strain:AF1581

Project description:Aliarcobacter lanthieri strain:AF1581 Genome sequencing and assembly

| PRJNA235330 | ENA

Aliarcobacter lanthieri strain:AF1440

Project description:Aliarcobacter lanthieri strain:AF1440 Genome sequencing and assembly

| PRJNA235329 | ENA

Aliarcobacter lanthieri

Project description:Aliiarcobacter lanthieri overview

| PRJNA492516 | ENA

Aliarcobacter faecis strain:LMG 28519

Project description:Aliarcobacter faecis strain:LMG 28519 Genome sequencing and assembly

| PRJNA521381 | ENA

Aliarcobacter cibarius LMG 21996

Project description:Aliarcobacter cibarius LMG 21996 Genome sequencing and assembly

| PRJNA232856 | ENA

Aliarcobacter lanthieri strain:R-75363

Project description:Arcobacter lanthieri R-75363 genome sequencing and assembly

| PRJNA645379 | ENA

Aliarcobacter cibarius LMG 21996

Project description:Aliarcobacter cibarius LMG 21996 Genome sequencing

| PRJNA633567 | ENA

Transcriptome profiling reveals the EanI/R quorum sensing regulon in Pantoea ananatis LMG 2665T

Project description:Background: Pantoea ananatis LMG 2665T synthesizes and utilizes acyl homoserine lactones (AHLs) for signaling. In this strain, short chain AHLs (C4 to C8) are produced by the EanI/R quorum sensing (QS) system that is involved in pathogenicity and biofilm formation. The complete set of genes regulated by the EanI/R system in P. ananatis LMG 2665T is still not fully known. In the present study, RNA-seq was used to analyze the transcriptome profiles controlled by the EanI/R system in this strain by comparing the wild type strain and its QS mutant 2665T ean∆I/R during lag and log stages. The RNA seq data was validated by RT qPCR. Results: The results showed that the EanI/R regulon in P. ananatis LMG 2665T comprised 144 genes, constituting 3.3% of the whole transcriptome under the experimental conditions in this study. The majority of genes regulated by the EanI/R system included genes for flagella assembly, bacterial chemotaxis, pyruvate metabolism, two component system, metabolic pathways, microbial metabolism and biosynthesis of secondary metabolites. Conclusions: This is the first study to identify the EanI/R QS regulon in P. ananatis LMG 2665T. Functional analysis of genes regulated the EanI/R system in LMG 2665T could help unveil genes that play a vital role in pathogenesis and survival strategies of this pathogen.

2018-10-31 | GSE87207 | GEO

Aliarcobacter faecis strain:AF1078

Project description:Aliarcobacter faecis strain:AF1078 Genome sequencing and assembly

| PRJNA235201 | ENA