Project description:Few aerobic hyperthermophiles degrade polysaccharides. We describe the genome-enabled enrichment and isolation of an aerobic hyperthermophile, Fervidibacter sacchari, which was originally ascribed to candidate phylum Fervidibacteria. F. sacchari uses polysaccharides and monosaccharides as sole carbon sources from 65-87.5 °C, and its genome encodes 117 glycoside hydrolases (GHs) spanning 49 GH families, including 31 homologs of understudied GH109, GH177, and GH179 domains. Here, we analyzed the transcriptomes of F. sacchari cells grown on eight different sole carbon and energy sources (beta-glucan, chondroitin sulfate, corn stover, gellan gum, locust bean gum, starch, xanthan gum, and xyloglucan) to link glycoside hydrolase substrate to function, as well as identify potential regulatory mechanisms. These data will provide preliminary characterization of novel carbohydrate-active enzymes at high temperatures.

2023-12-31 | GSE249938 | GEO

Laceyella sacchari isolate:FBKL4.010

Project description:Laceyella sacchari isolate:FBKL4.010 Genome sequencing and assembly

| PRJNA429506 | ENA

Gene expression analysis by mRNAseq in Fusarium graminearum WT and a DNMT mutant

Project description:Identifying the role of two DNA methyltransferase enzymes in Fusarium graminearum isolate NRRL29169 by high-throughput mRNA sequencing under 2 environmental conditions.

2021-03-03 | GSE140030 | GEO

Gene expression analysis by RNAseq in Fusarium graminearum WT, TRI6 mutant (∆tri6) and a mutant constitutively expressing TRI6 (∆tri6/TRI6).

Project description:Identifying the role of TRI6 in Fusarium graminearum isolate NRRL29169 by high-throughput RNA sequencing under two environemental conditions.

2020-06-05 | GSE141331 | GEO

Fusarium oxysporum isolate:MR22802

Project description:Fusarium oxysporum isolate:MR22802 Genome sequencing

| PRJNA689925 | ENA

Fusarium oxysporum isolate:MR2280

Project description:Fusarium oxysporum isolate:MR2280 Genome sequencing

| PRJNA690593 | ENA

Melanaphis sacchari

Project description:Melanaphis sacchari Genome sequencing and assembly

| PRJNA316592 | ENA