Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Comparison of methylome data generated with HiSeq X Ten and NovaSeq

ABSTRACT: Comparison of methylome data generated with HiSeq X Ten and NovaSeq

PROVIDER: PRJNA524929 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Similar Datasets

Comparison of methylome data generated with HiSeq X Ten and NovaSeq

Project description:To compare the difference of sequencing platform, a sequencing library was served for sequencing on HiSeq X Ten and NovaSeq 6000.

2019-03-01 | GSE127569 | GEO

Optimization of the input amount of library for whole-genome bisulfite sequencing on HiSeq X Ten

Project description:To know the optimal amount of input library for HiSeq X Ten, the amount of input library was varied. Six lanes of sequencing on HiSeq X Ten was performed.

2018-08-28 | GSE119068 | GEO

Transcriptome analysis of Opium poppy using Illumina HiSeq X Ten platform

Project description:Transcriptome analysis of Opium poppy using Illumina HiSeq X Ten platform

| PRJNA531829 | ENA

Transcriptome analysis of Opium poppy using Illumina HiSeq X Ten platform [cultivars]

Project description:Purpose: Opium poppy is one of the most important medical plants and remains the only commercial resource of morphinan-based painkillers. However, little is known about its regulation mechanism in benzylisoquinoline alkaloids (BIAs) biosynthesis. Herein, the Transcriptome dataset of Opium poppy was constructed to identify the gene involved in its regulation mechanism in BIAs biosynthesis. Methods: Using Illumina HiSeq X Ten platform, 33 samples of Illumina transcriptome data from different tissues, growth phases and cultivars were constructed. Results: The high-quality transcripts were subsequent quantified with the short reads, and the expression of each unigenes among different samples was calculated by RPKM (the reads per kilobase per million mapped reads). Conclusions: These data provide a foundation of opium poppy transcriptome which may contribute to understand the regulation of BIAs biosynthesis.

2019-04-11 | GSE129567 | GEO

Transcriptome analysis of Opium poppy using Illumina HiSeq X Ten platform [growth phases]

2019-04-11 | GSE129566 | GEO

Transcriptome analysis of Opium poppy using Illumina HiSeq X Ten platform [different tissues]

2019-04-11 | GSE129565 | GEO

Comparison of methylome data obtained with rPBAT and tPBAT.

Project description:To compare the difference of library preparation protocols for whole-genome bisulfite sequencing, two libraries were prepared from genomic DNA extracted from IMR90 cell with rPBAT and tPBAT. Two and tree lanes of HiSeq X Ten were assigned for tPBAT and rPBAT libraries, respectively

2018-08-28 | GSE119069 | GEO

Optimization of the input amount of library for whole-genome bisulfite sequencing on HiSeq X Ten

Project description:Optimization of the input amount of library for whole-genome bisulfite sequencing on HiSeq X Ten

| PRJNA488045 | ENA

Oryza sativa ssp. indica Illumina libraries of the method plant-RRBS used for methylome profiling

Project description:The contained data consist of Illumina HiSeq 2500 reads generated from restriction endonuclease digested genomic DNA of Oryza sativa ssp. indica used as proof of concept for plant-RRBS methylome profiling by bioinformatics analyses. Five biological repeats for an inbred control line and a derived epiline of the 4th generation where analysed using two restriction endonuclease combination (MspI-DpnII or MspI-ApekI).

2017-12-14 | E-MTAB-4626 | biostudies-arrayexpress

Oryza sativa ssp. indica Illumina lwhole-genome bisulfite sequencing used for coverage comparison next to the method plant-RRBS

Project description:The contained data consist of Illumina HiSeq reads generated genomic DNA of Oryza sativa ssp. indica used for comparative coverage aspects with plant-RRBS methylome profiling by bioinformatics analyses. The inbred control line and a derived epiline LR2 of the 4th selfing were analysed using whole-genome bisulfite sequencing.

2017-12-14 | E-MTAB-5002 | biostudies-arrayexpress

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data