Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Sphingobacterium endophyticum strain:NYYP31

ABSTRACT: Sphingobacterium endophyticum strain:NYYP31 Genome sequencing and assembly

PROVIDER: PRJNA525344 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Similar Datasets

Analysis of differential gene expression in the degradation of tetracycline by Sphingobacterium sp. WM1

Project description:We isolated an efficient tetracycline degrading strain Sphingobacterium sp. WM1. To investigate gene expression patterns during tetracycline degradation by strain WM1, we conducted a comparative transcriptomic analysis using cultures of strain WM1 with and without tetracycline addition. The RNA-Seq data revealed that 90.44-96.56% of the reads mapped to the genome of Sphingobacterium sp. WM1 across all samples. Differentially expressed genes (DEGs) analysis (|log2FC| >2; p < 0.01) showed that 693 genes were significantly up-regulated and 592 genes were significantly down-regulated.

2023-09-21 | GSE234909 | GEO

Phyllobacterium endophyticum strain:mTS5

Project description:Phyllobacterium endophyticum strain:mTS5 Genome sequencing and assembly

| PRJNA559855 | ENA

Phyllobacterium endophyticum strain:PEPV15

Project description:Phyllobacterium endophyticum strain:PEPV15 Genome sequencing and assembly

| PRJNA562136 | ENA

Brachybacterium endophyticum strain:M1HQ-2

Project description:Brachybacterium endophyticum strain:M1HQ-2 Genome sequencing and assembly

| PRJNA454806 | ENA

Aeromicrobium endophyticum strain:M2KJ-4

Project description:Aeromicrobium endophyticum strain:M2KJ-4 Genome sequencing and assembly

| PRJNA484549 | ENA

Microbacterium endophyticum strain:DSM 27099

Project description:Microbacterium endophyticum strain:DSM 27099 Genome sequencing

| PRJNA608230 | ENA

Frigoribacterium endophyticum strain:AS3.20

Project description:Frigoribacterium endophyticum AS3.20 genome sequencing

| PRJNA546678 | ENA

Sphingobacterium alkalisoli strain:Y3L14

Project description:Sphingobacterium alkalisoli strain:Y3L14 Genome sequencing and assembly

| PRJNA533943 | ENA

Sphingobacterium litopenaei strain:DN04309

Project description:Sphingobacterium litopenaei strain:DN04309 Genome sequencing and assembly

| PRJNA657675 | ENA

Sphingobacterium micropteri strain:DN00404

Project description:Sphingobacterium micropteri strain:DN00404 Genome sequencing and assembly

| PRJNA657678 | ENA

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data