Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Pseudomonas chlororaphis subsp. aurantiaca strain:ARS 38 | isolate:ARS 38

ABSTRACT: Pseudomonas chlororaphis subsp. aurantiaca strain:ARS 38 | isolate:ARS 38 Genome sequencing and assembly

PROVIDER: PRJNA542228 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Similar Datasets

Pseudomonas chlororaphis subsp. aurantiaca strain:YS05

Project description:Pseudomonas chlororaphis subsp. aurantiaca strain:YS05 Genome sequencing

| PRJNA646039 | ENA

Pseudomonas chlororaphis subsp. aurantiaca strain:YS21

Project description:Pseudomonas chlororaphis subsp. aurantiaca strain:YS21 Genome sequencing

| PRJNA689326 | ENA

Pseudomonas chlororaphis subsp. aurantiaca strain:JD37

Project description:Pseudomonas chlororaphis subsp. aurantiaca strain:JD37 Genome sequencing

| PRJNA257686 | ENA

Pseudomonas chlororaphis subsp. aurantiaca strain:B-162

Project description:Pseudomonas chlororaphis subsp. aurantiaca strain:B-162 Genome sequencing

| PRJNA615084 | ENA

Pseudomonas chlororaphis subsp. aurantiaca strain:SMMP3

Project description:Pseudomonas chlororaphis subsp. aurantiaca strain:SMMP3 Genome sequencing and assembly

| PRJNA683927 | ENA

Pseudomonas chlororaphis subsp. aurantiaca PB-St2

Project description:Pseudomonas chlororaphis subsp. aurantiaca PB-St2 Genome sequencing and assembly

| PRJNA225665 | ENA

Pseudomonas chlororaphis strain:lmg 21630

Project description:Pseudomonas chlororaphis subsp. aurantiaca LMG 21630 genome sequencing

| PRJNA303836 | ENA

Hfq regulated genes in Pseudomonas chlororaphis 30-84

Project description:Pseudomonas chlororaphis strain 30-84 is an effective biological control agent against take-all disease of wheat. In this study, we conducted an RNA-seq analysis by comparing the wild type strain with a Hfe deficient mutant. RNA-seq analysis identified over 900 genes differentially regulated by Hfq. A total of 4 samples were analyzed in AB medium + 2% casamino acids, Pseudomonas chlororaphis wild type strain (2 replicates); Pseudomonas chlororaphis ZN mutant (2 replicates).

2016-07-22 | E-GEOD-49425 | biostudies-arrayexpress

Phenazine regulated genes in Pseudomonas chlororaphis 30-84

Project description:Pseudomonas chlororaphis strain 30-84 is an effective biological control agent against take-all disease of wheat. Phenazines, bacterial secondary metabolites produced by 30-84, are essential for 30-84 to inhibit fungal pathogens, form biofilms, and effectively colonize the rhizosphere. However, how the bacteria themselves respond to phenazines remains unknown. In this study, we conducted an RNA-seq analysis by comparing the wild type strain with a phenazine deficient mutant. RNA-seq analysis identified over 200 genes differentially regulated by phenazines. Consistent with previous findings in Pseudomonas aeruginosa PAO1, phenazines positively contribute to the expression of their own biosynthetic genes. Moreover, phenazine regulatory genes including the phzI/phzR quorum sensing system and the rpeB response regulatory were also expressed at high levels in the presence of phenazines. Besides phenazine biosynthesis and regulatory genes, genes involved in secondary metabolism, exopoysaccharide production and iron uptake as well as amino acid transport were identified as the major components under phenazine control, including many novel genes. We have also demonstrated that mutation of the primary siderophore gene pvdA resulted in up-regulation of phenazine genes when grown in iron-limiting media. These findings implicate phenazines as signaling molecules to regulate gene expression and hence alter metabolism in P. chlororaphis strain 30-84. A total of 4 samples were analyzed in AB medium + 2% casamino acids, Pseudomonas chlororaphis wild type strain (2 replicates); Pseudomonas chlororaphis ZN mutant (2 replicates).

2014-11-25 | E-GEOD-45247 | biostudies-arrayexpress

Genes differentially expressed in Pseudomonas chlororaphis 30-84 SCV

Project description:To better understand transcriptional changes in the SCV, RNA-seq analyses were conducted by comparing a SCV mutant to the wild-type. Transcriptomic profiling identified more than 1000 genes indicating a significant reprograming of gene expression in the SCV mutant. In accordance with observed phenotypes, genes involved in metabolism functions, motility and phenazine production were downregulated; whereas, oxidative stress and iron uptake genes were significantly upregulated. A total of 5 samples were analyzed in AB medium + 2% casamino acids, Pseudomonas chlororaphis wild type strain (3 replicates); Pseudomonas chlororaphis SCV mutant (2 replicates).

2014-11-25 | E-GEOD-51293 | biostudies-arrayexpress

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data