Project description:Transcriptional profiling of Paracoccus denitrificans PD1222 wild type incubated in continuous culture (continuous culture (CSTR)) in minimal media with aerobic or anaerobic conditions. The goal was to define the core respiratory genes.

2017-06-30 | GSE97959 | GEO

Achromobacter denitrificans

Project description:Achromobacter denitrificans Genome sequencing and assembly

| PRJNA499159 | ENA

Achromobacter denitrificans strain:PR1

Project description:Achromobacter denitrificans strain:PR1 Genome sequencing and assembly

| PRJNA383898 | ENA

Achromobacter denitrificans strain:MT3

Project description:Achromobacter denitrificans strain:MT3 Genome sequencing and assembly

| PRJNA359932 | ENA

Genome-enabled studies of anaerobic, nitrate-dependent Fe(II) oxidation in the chemolithoautotrophic bacterium Thiobacillus denitrificans

Project description:Investigation of whole genome gene expression level changes in anaerobic, nitrate-dependent Fe(II) oxidation in the chemolithoautotrophic bacterium Thiobacillus denitrificans

2013-08-15 | GSE46339 | GEO

Genome-enabled studies of anaerobic, nitrate-dependent Fe(II) oxidation in the chemolithoautotrophic bacterium Thiobacillus denitrificans

Project description:Investigation of whole genome gene expression level changes in anaerobic, nitrate-dependent Fe(II) oxidation in the chemolithoautotrophic bacterium Thiobacillus denitrificans Here we report on a study to identify genes associated with nitrate-dependent Fe(II) oxidation by whole-genome transcriptional (microarray) assays including the use of FeCO3, Fe2+, and U(IV) oxides as electron donors under denitrifying conditions. A 25 chip study using total RNA recovered from wild-type T. denitrificans was cultivated at 30oC under strictly anaerobic conditions with growth medium that contained 20 mM thiosulfate, 20 mM nitrate, and 30 mM bicarbonate (pH ~7) and exposed to 8 treatments. Each chip measures the expression level of 2832 ORFs with N 24-mer probe pairs (PM/MM) per gene, with three-fold technical redundancy.

2013-08-15 | E-GEOD-46339 | biostudies-arrayexpress

Achromobacter denitrificans

Project description:Whole genome sequencing of Achromobacter xylosoxidans subsp. denitrificans, an opportunistic pathogen

| PRJDB1905 | ENA