Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Transcriptome of cct3A(RNAi) planarians at 72 hours of regeneration

ABSTRACT: Transcriptome of cct3A(RNAi) planarians at 72 hours of regeneration

PROVIDER: PRJNA553489 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Similar Datasets

Transcriptome of cct3A(RNAi) planarians at 72 hours of regeneration

Project description:We performed RNA-seq of whole starved cct3A(RNAi) planarians and controls at 72hR.

2021-04-26 | GSE134013 | GEO

Identification of dysregulated transcripts in nkx2.2(RNAi) planarians.

Project description:Nkx2.2 is an intestine-enriched transcription factor required for regeneration in planarians. The goal of this study was to identify differentially expressed transcripts in uninjured nkx2.2(RNAi) planarians.

2022-05-24 | GSE174228 | GEO

Identification of dysregulated transcripts in apob-1(RNAi);apob-2(RNAi) planarians

Project description:ApoB-1 and ApoB-2 are intestine-enriched regulators of lipoprotein secretion in planarians. The goal of this study was to identify differentially expressed transcripts in uninjured apob-1(RNAi);apob-2(RNAi) double knockdown planarians relative to egfp(RNAi) control animals.

2022-05-24 | GSE174227 | GEO

iTRAQ-Based Quantitative Proteomic Analysis of the Initiation of Head Regeneration in Planarians

Project description:The planarian Dugesia japonica has amazing ability to regenerate a head from the anterior ends of the amputated stump with maintenance of the original anterior-posterior polarity. Although planarians present an attractive system for molecular investigation of regeneration and research has focused on clarifying the molecular mechanism of regeneration initiation in planarians, but proteomic studies are still in the early stages. Here, a global proteomics analysis of regenerating head fragments in planarians at 0h, 2h and 6h after amputation was performed using isobaric tags for relative and absolute quantitation (iTRAQ)-based quantitative proteomics coupled with LC-MS/MS strategy. Then the significantly changed proteins were identified. The correlation betwwen protein expression profiles and signaling pathways/biological processes was analyzed by bioinformatics and systems biology.

2015-07-07 | PXD002100 | Pride

Transcriptional profiling of Schmidtea mediterranea planarians (smed-runt-1 RNAi vs. control RNAi)

Project description:Transcriptional profiling of Schmidtea mediterranea planarians that have been subjected to 2 weeks of runt-1 or control RNAi, amputated and RNA was directly collected at 5min, 9h, and 24h, or neoblasts (X1) were isolated from 9h wounded animals and subsequently RNA was extracted

2012-04-30 | GSE36869 | GEO

Transcriptional profiling of Schmidtea mediterranea planarians (smed-runt-1 RNAi vs. control RNAi)

2012-04-29 | E-GEOD-36869 | biostudies-arrayexpress

Identification of dysregulated transcripts in nkx2.2(RNAi) planarians.

Project description:Identification of dysregulated transcripts in nkx2.2(RNAi) planarians.

| PRJNA728884 | ENA

Identification of dysregulated transcripts in apob-1(RNAi);apob-2(RNAi) planarians

Project description:Identification of dysregulated transcripts in apob-1(RNAi);apob-2(RNAi) planarians

| PRJNA728883 | ENA

RNAseq in whole freshwater planarians, Schmidtea mediterranea, following RNAi of the transcription factors lhx1/5-1 and pitx.

Project description:Freshwater planarians can be used as a model to investigate neuronal function and maintenance in adults in vivo. We knocked down expression for 2 transcription factors, then sequenced resulting animals to examine transcriptional changes that may have occurred. There are 3 triplicated conditions: control(RNAi) using the unc22 gene from C. elegans, lhx1/5-1(RNAi), and pitx(RNAi). Worms were fed RNAi for each gene 5 times over 12 days then were collected 12 days later. Approximately 50 million single-end reads were performed on each sample.

2013-05-31 | E-GEOD-47348 | biostudies-arrayexpress

PCSK9 knockdown in EndoC-bH1 cells at 72 hours

Project description:PCSK9 knockdown in EndoC-bH1 cells at 72 hours

| PRJNA754177 | ENA