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Transcriptomic analysis of Arthrobacter sp. CGMCC 3584 responding to pde gene knockout

ABSTRACT: Transcriptomic analysis of Arthrobacter sp. CGMCC 3584 responding to pde gene knockout

PROVIDER: PRJNA556887 | ENA |

REPOSITORIES: ENA

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Transcriptomic analysis of Arthrobacter sp. CGMCC 3584 responding to pde gene knockout

2020-01-01 | GSE134961 | GEO

Transcriptomic analysis of Arthrobacter sp. CGMCC 3584 responding to dissolved oxygen for cAMP production

Project description:Arthrobacter sp. CGMCC 3584 are able to produce high yields of extracellular cyclic adenosine monophosphate (cAMP), which plays a vital role in the field of treatment of disease and animal food, during aerobic fermentation. DNA array-based transcriptional analysis of Arthrobacter cells was conducted to elucidate the higher productivity of cAMP under high oxygen supply. Results showed that 14.1% and 19.3% of the whole genome genes were up-regulated and down-regulated notably, respectively. The largest group with altered transcriptional levels belonged to the group involved in carbohydrate transport and metabolism. Other large functional groups of differentially expressed genes changed significantly included amino acid transport and metabolism, inorganic ion transport and metabolism and transcription.

2017-06-02 | GSE99546 | GEO

Arthrobacter sp. CGMCC 3584

Project description:Transcriptomic analysis of Arthrobacter sp. CGMCC 3584 responding to dissolved oxygen for cAMP production

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Transcriptome analysis of Arthrobacter in the phyllosphere

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Arthrobacter agilis strain:CGMCC 1.15723

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Arthrobacter deserti strain:CGMCC 1.15091

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Transcriptome analysis of Arthrobacter in the phyllosphere

Project description:Arthrobacter chlorophenolicus A6 is a 4-chlorophenol degrading soil bacterium with high phyllosphere colonization capacity. Till now the genetic basis for the phyllosphere competency of Arthrobacter or other pollutant-degrading bacteria is uncertain. We investigated global gene expression profile of A. chlorophenolicus grown in the phyllosphere of common bean (Phaseolus vulgaris) compared to growth on agar surfaces. We designed transcriptome arrays and investigated which genes had different transcript levels in the phyllosphere of common bean (Phaseolus vulgaris) as compared to agar surfaces. Since water availability is considered an important factor in phyllosphere survival and activity, we included both high and low relative humidity treatments for the phyllosphere-grown cells. In addition, we determined the expression profile under pollutant exposure by the inclusion of two agar surface treatments, i.e. with and without 4-chlorophenol.

2013-06-21 | E-GEOD-48198 | biostudies-arrayexpress

Comparative transcriptomic and proteomic analysis of Arthrobacter sp. CGMCC 3584 responding to dissolved oxygen for cAMP production.

Project description: Not available

| S-EPMC5775200 | biostudies-literature

phbC plays an important role in curdlan biosynthesis of Agrobacterium sp. CGMCC 11546

Project description:Purpose： The goal of this study is compare the effect of phbC gene in curdlan synthesis in Agrobacterium sp. CGMCC 11546. methods: The transcriptional and metabolomics analysis the function of phbC in Agrobacterium sp. CGMCC 11546. Results:The transcriptional and metabolomics showed that the decrease of curdlan production in the ΔphbC mutants may be caused by the insufficient supply of energy ATP conclusion:phbC play an important role in curdlan synthesis in Agrobacterium sp. CGMCC 11546

2022-06-30 | GSE153504 | GEO

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