Project description:The Pan-Cancer Analysis of Whole Genomes (PCAWG) study is an international collaboration to identify common patterns of mutation in more than 2,800 cancer whole genomes from the International Cancer Genome Consortium. Building upon previous work which examined cancer coding regions, this project is exploring the nature and consequences of somatic and germline variations in both coding and non-coding regions, with specific emphasis on cis-regulatory sites, non-coding RNAs, and large-scale structural alterations. Read more on the <a href=\"https://dcc.icgc.org/pcawg\" target=\"_blank\">project website</a>.<br>This is a subset featuring RNA-seq transcription profiling data of 27 cancer subtypes in 19 tissues. Some donors have matched normal tissue. As general reference, a subset of normal tissue samples from the GTEx project were included in this experiment.

2020-02-05 | E-MTAB-5200 | biostudies-arrayexpress

Protein stable isotope fingerprinting (P-SIF): Mahoney Lake (Canada) 7-m biomass

Project description:Protein stable isotope fingerprinting (P-SIF) is a method to measure the carbon isotope ratios of whole proteins separated from complex mixtures, including cultures and environmental samples. The goal of P-SIF is to expose the links between identity and function in microbial ecosystems by (i) determining the values of δ13C for different taxonomic divisions, and (ii) using those values as clues to the metabolic pathways employed by the respective organisms. This project measures a limited number of protein fractions and δ13C values for a sample of floating, mat-like microbial biomass of an intensely phototrophic layer from Mahoney Lake, BC Canada.

2015-11-10 | PXD003125 | Pride

Bordetella sequencing project

Project description:Whole genome sequencing project of Bordetella isolates

| PRJEB5039 | ENA

Melanoma Genome Sequencing Project

Project description:Melanoma Genome Sequencing Project

| PRJNA82745 | ENA

Listeria monocytogenes

Project description:PulseNet Canada Listeria monocytogenes whole genome sequencing

| PRJNA563085 | ENA

Salmonella enterica

Project description:PulseNet Canada Salmonella enterica whole genome sequencing