Project description:Illumina technology was used to generate mRNA profiles of a time course of Laccaria bicolor S238N and Populus tremula x alba 717-1B4 in vitro ectomycorrhizal development. Total RNA was extracted, TruSeq mRNA Stranded libraries were constructed and and sequenced in triplicates (2 x 150 bp Illumina HiSeq3000) at the Genotoul sequencing facilities (Toulouse, France). Raw reads were trimmed for low quality (quality score 0.05), Illumina adapters and sequences shorter than 15 nucleotides and aligned to the L. bicolor v2 reference transcripts available at the JGI database https://mycocosm.jgi.doe.gov/Lacbi2/Lacbi2.home.html using CLC Genomics Workbench v8.

2021-12-15 | GSE190443 | GEO

Populus tremula x Populus alba cultivar:INRA 717-1B4 Cas9-19

Project description:Populus tremula x alba INRA 717-1B4 Cas9-19 Resequencing

| PRJNA566963 | ENA

Populus tremula x Populus alba cultivar:717-1B4

Project description:Populus tremula x alba INRA 717-1B4 WT Resequencing

| PRJNA566962 | ENA

Gene expression changes in Cenococcum geophilum 1.58-Populus tremulaxalba INRA 717-1B4 ectomycorrhizal roots compared to Cenococcum geophilum free-living mycelium

Project description:Illumina HiSeq technology was used to generate mRNA profiles from Cenococcum geophilum ectomycorrhizal poplar roots compared to free-living mycelium . Ectomycorrhizal poplar roots and control mycelium were harvested after 60 days and used for RNA extraction. Reads of 150bp were generated and aligned to the C. geophilum reference genome (https://genome.jgi.doe.gov/Cenge3/Cenge3.home.html).

2018-03-01 | GSE108831 | GEO

Populus tremula alba 717-1B4 cuttings

Project description:Populus tremula alba 717-1B4 cuttings Raw sequence reads

| PRJNA657694 | ENA

Populus tremula x Populus alba strain:717-1B4 | cultivar:717-1B4

Project description:Populus tremula × alba 717-1B4 Bisulfite Sequencing - sample 28 epigenomics

| PRJNA333122 | ENA