Browse
Submit Data
Databases
API
Help
Login

Dataset Information

0 Views

5 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 1000

Root metagenome

ABSTRACT: Metatranscriptome of Brachypodium distachyon Bd21 roots infected Barley stripe mosaic virus from Texas, United States - 7dpi-Brachy-root-BSMV_B

PROVIDER: PRJNA569718 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

primary

			Action	DRS
	SRR10663505_1.fastq.gz	Fastqsanger.gz
	SRR10663505_2.fastq.gz	Fastqsanger.gz

Items per page:

1 - 2 of 2

Similar Datasets

root metagenome

Project description:Metatranscriptome of Brachypodium distachyon Bd21 roots infected Barley stripe mosaic virus from Texas, United States - 14dpi-Brachy-root-BSMV_B

| PRJNA569552 | ENA

root metagenome

Project description:Metatranscriptome of Brachypodium distachyon Bd21 roots infected Barley stripe mosaic virus from Texas, United States - 3dpi-Brachy-root-BSMV_B

| PRJNA569706 | ENA

root metagenome

Project description:Metatranscriptome of Brachypodium distachyon Bd21 roots infected Barley stripe mosaic virus from Texas, United States - 7dpi-Brachy-root-BSMV_C

| PRJNA569541 | ENA

root metagenome

Project description:Metatranscriptome of Brachypodium distachyon Bd21 roots infected Barley stripe mosaic virus from Texas, United States - 7dpi-Brachy-root-BSMV_A

| PRJNA569717 | ENA

root metagenome

Project description:Metatranscriptome of Setaria viridis A10 roots infected Barley stripe mosaic virus from Texas, United States - 7dpi-Set-root-BSMV_B

| PRJNA621706 | ENA

Fine mapping of the Bsr1 barley stripe mosaic virus resistance gene in the model grass Brachypodium distachyon.

Project description:The ND18 strain of Barley stripe mosaic virus (BSMV) infects several lines of Brachypodium distachyon, a recently developed model system for genomics research in cereals. Among the inbred lines tested, Bd3-1 is highly resistant at 20 to 25 °C, whereas Bd21 is susceptible and infection results in an intense mosaic phenotype accompanied by high levels of replicating virus. We generated an F(6:7) recombinant inbred line (RIL) population from a cross between Bd3-1 and Bd21 and used the RILs, and an F(2) population of a second Bd21 × Bd3-1 cross to evaluate the inheritance of resistance. The results indicate that resistance segregates as expected for a single dominant gene, which we have designated Barley stripe mosaic virus resistance 1 (Bsr1). We constructed a genetic linkage map of the RIL population using SNP markers to map this gene to within 705 Kb of the distal end of the top of chromosome 3. Additional CAPS and Indel markers were used to fine map Bsr1 to a 23 Kb interval containing five putative genes. Our study demonstrates the power of using RILs to rapidly map the genetic determinants of BSMV resistance in Brachypodium. Moreover, the RILs and their associated genetic map, when combined with the complete genomic sequence of Brachypodium, provide new resources for genetic analyses of many other traits.

| S-EPMC3366947 | BioStudies

leaf metagenome

Project description:Metatranscriptome of Brachypodium distachyon Bd21 leaves infected Barley stripe mosaic virus from Texas, United States - 7dpi-Brachy-leaf-BSMV_B

| PRJNA621786 | ENA

root metagenome

Project description:Metatranscriptome of Brachypodium distachyon Bd21 roots infected Barley stripe mosaic virus from Texas, United States - 3dpi-Brachy-root-BSMV_C

| PRJNA569707 | ENA

root metagenome

Project description:Metatranscriptome of Brachypodium distachyon Bd21 roots infected Barley stripe mosaic virus from Texas, United States - 14dpi-Brachy-root-BSMV_C

| PRJNA569553 | ENA

root metagenome

Project description:Metatranscriptome of Brachypodium distachyon Bd21 roots infected Barley stripe mosaic virus from Texas, United States - 3dpi-Brachy-root-BSMV_A

| PRJNA569705 | ENA

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data