Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Long non-coding RNAs and mRNAs profiling of liver tissue during four developmental stages in chickens

ABSTRACT: Long non-coding RNAs and mRNAs profiling of liver tissue during four developmental stages in chickens

PROVIDER: PRJNA574932 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Similar Datasets

Long non-coding RNAs and mRNAs profiling of liver tissue during four developmental stages in chickens

Project description:Liver is the major organ of lipid biosynthesis in chicken. In laying hens, the liver synthesizes most of yolk precursors and transports to the developing follicles to produce eggs. However, a systematic and comprehensive investigation of long non-coding RNAs (lncRNAs) and mRNAs transcriptome in chicken liver across different developmental stages remain clearly unknown. Here, we constructed 12 RNA libraries from liver tissue during four developmental stages, including juvenile period (JP, day 60), sexual maturity period (SM, day 133), peak laying period (PL, day 220) and broodiness period (BP, day 400). A total of 16,930 putative lncRNAs and 18,260 mRNAs were identified among these samples. More than half of identified lncRNAs were intergenic lncRNAs (lincRNAs), accounting for 53.70%. The temporal expression pattern showed that lncRNAs were more restricted than mRNAs. We identified numerous differentially expressed lncRNAs (DE lncRNA) and mRNAs (DEGs) by pairwise comparisons between the four developmental stages and found that vitellogenin 2 (VTG2), riboflavin binding protein (RBP), and a novel protein-coding gene were differentially expressed in all stages. Time-series analysis showed that the module with up-regulated genes were enriched in related to lipid metabolism process. Co-expression networks suggested the functional relatedness between mRNAs and lncRNAs and the results showed the DE-lncRNAs also mainly involve in lipid biosynthesis and metabolism process. These results suggest the transcriptome variation of liver in different developmental stages and improve the comparative understandings of molecular mechanisms of liver development in chickens.

2020-06-05 | GSE138152 | GEO

Gene expression profiles of Schistosoma japonicum in four developmental stages

Project description:In the complex lifecycle of schistosomes, four developmental stages are closely associated with their definitive hosts: cercaria (infective stage), schistosomula and adult worm (parasitic stages), egg (pathogenic- and pathophoresis-stage). We have examined the gene expression profiles of Schistosoma japonicum in the four developmental stages. Genes with different expression patterns were identified and the information obtained will help indentify new anti-schistosomal intervention targets in the future.

2017-02-09 | GSE57143 | GEO

Long non-coding RNA profile of the liver across three developmental stages in chickens

Project description:Long non-coding RNA profile of the liver across three developmental stages in chickens

| PRJNA495372 | ENA

Sleep dependent changes in the transcriptome of wild type mice at four different developmental stages.

Project description:This dataset constitutes the first RNA-Seq study of gene expression following sleep deprivation in wild type mice at four different developmental stages, P16, P24, P40 and P90

2023-01-16 | GSE211301 | GEO

Proteome of hrsc1 seed at four different developmental stages

Project description:The grains of mutant hrsc1 exhibited a severe chalkiness phenotype relative to its wild type QZ-10. Physiological measurements and scanning electron microscopy observation further indicated that hrsc1 grains contain oval irregular starch granules, as well as significantly increased RS (up to 14-fold), amylose (up to 1.6-fold), lipid (up to 3-fold) and protein (up to 1.2-fold) contents. Dynamic proteome of grains were analyzed on four different development stages (DAF 6d, 12d, 18d and 24d) during filling stage between hrsc1 and QZ-10.

2024-01-31 | PXD049027 | iProX

Comparative transcriptome analysis reveals genes regulating myogenesis and adipogenesis in Laiwu pigs over four developmental stages

Project description:We performed transcriptome analysis of the longissimus dorsi (LD) muscle during four development stages (60, 120, 240 and 400 days after birth) in Laiwu pigs, an indigenous fatty pig breed in North China. This study provides a reference for exploring transcriptome regulation mechanisms affecting muscle growth and development in obese pigs.

2016-11-23 | GSE90135 | GEO

Transcriptomic analysis of Grapevine (cv. Summer Black) leaf at four developmental stages, using the Illumina Platform

Project description:conducted to find out the transcriptional system that is connected with the development of leaves and production of metabolites during photosynthesis. We examine the cellular expression by use the up-to-date RNA sequencing expertise to carry out a complete analysis of the transcriptional profile of V. vinifera leaves at four different developmental stages.

2015-10-29 | GSE74428 | GEO

Miniature pigs tooth germ tissue: four different developing stages

Project description:The miRNAs expression profile of four typical stages of tooth development, embryonic day 35 (E35), E45, E50, and E60, which cover the major morphological and physiological changes in pig tooth germ growth and development throughout pregnancy, including the bud, cap, early bell, and late bell stages.

2012-08-03 | GSE39848 | GEO

chickens

Project description:chickens Metagenome

| PRJNA428831 | ENA

Protein atlas of four larval stages of Maruca vitrata

Project description:The present work is the pioneering report depicting the total proteomic atlas of four major developmental stages (third, fourth, fifth instar and pupa) of M. vitrata by LC-MS/MS analyses.

2023-11-20 | PXD043092 | Pride

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data