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Expression data from roots of WT and fit plants exposed to either Fe sufficient or Fe deficient conditions for 72 hours

ABSTRACT: Expression data from roots of WT and fit plants exposed to either Fe sufficient or Fe deficient conditions for 72 hours

PROVIDER: PRJNA579805 | ENA |

REPOSITORIES: ENA

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Expression data from roots of WT and fit plants exposed to either Fe sufficient or Fe deficient conditions for 72 hours

Project description:PMID: 15539473. We compared the gene expression in roots between WT and fit mutant under +Fe and -Fe conditions using ATH1 microarray analysis to explore which genes are affected by the loss of FIT function.

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Expression data from roots of WT and uri plants exposed to either Fe sufficient or Fe deficient conditions for 72 hours

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Expression data from roots of WT and bts-3 plants exposed to either Fe sufficient or Fe deficient conditions for 72 hours

Project description:We wanted to understand at what level BTS acts, i.e. how upstream BTS acts and if BTS misregulation affets only a subset or multiple subsets of Fe regulated genes. We studied WT and bts-3 mutant roots. Using microarray analysis, we demonstrated that bts-3 has a consitutitive expression of Fe deficiency response in root.

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Expression data from roots of WT and uri plants exposed to either Fe sufficient or Fe deficient conditions for 72 hours

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ChIP-seq data from roots of the uri complementation line exposed to either Fe sufficient or Fe deficient conditions for 72 hours

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ChIP-seq data from roots of the uri complementation line exposed to either Fe sufficient or Fe deficient conditions for 72 hours

Project description:ChIP-seq data from roots of the uri complementation line exposed to either Fe sufficient or Fe deficient conditions for 72 hours

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fe-fit-diff_6d-Differential gene expression in A. thaliana roots depending on iron supply and FIT (FER-LIKE IRON DEFICIENCY-INDUCED TRANSCRIPTION FACTOR) abundance

Project description:au15-01_iron-fit - fe-fit-diff_6d - Changes in gene expression profiles between fit knock-out, wild-type and FIT overexpressor seedlings under sufficient iron supply and under iron deficiency. - Col-0, HA-FIT and fit-3.

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iTRAQ analyses of Fe-sufficient and Fe-deficient non-transformant and HRZ-knockdown rice roots

Project description:We conducted iTRAQ analyses using soluble proteins extracted from roots of non-transformant rice (NT) and previously generated HRZ-knockdown (HRZi) lines (Kobayashi et al., 2013 Nat Commun 4: 2792) cultivated under Fe-sufficient and Fe-deficient conditions. We identified and quantified 3,033 and 3,525 proteins in replicate 1 and 2, respectively, which totaled 4,884 proteins including 1,698 overlapping proteins between the two replicate experiments.

2022-04-08 | PXD026597 | Pride

Fe-FIT-Diff

Project description:au13-06_fit - Fe-FIT-Diff - FIT (FER-LIKE IRON DEFICIENCY-INDUCED TRANSCRIPTION FACTOR) is a regulator of Fe deficiency responses in the root. FIT is a basic helix-loop-helix protein. Here, we investigated the transcriptome changes in response to Fe deficiency (- Fe) versus the control condition (+ Fe) in wild type, the fit-3 loss of function mutant and in FIT overexpression plants.

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