Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Rhodocyclaceae bacterium strain:JGI_KR11_SmLR_5_F10

ABSTRACT: Rhodocyclaceae bacterium strain:JGI_KR11_SmLR_5_F10 Genome sequencing

PROVIDER: PRJNA585091 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Similar Datasets

Rhodocyclaceae bacterium strain:JGI_KR11_SmLR_4_D6

Project description:Rhodocyclaceae bacterium strain:JGI_KR11_SmLR_4_D6 Genome sequencing

| PRJNA584277 | ENA

Rhodocyclaceae bacterium strain:JGI_KR11_SmLR_5_G17

Project description:Rhodocyclaceae bacterium strain:JGI_KR11_SmLR_5_G17 Genome sequencing

| PRJNA584278 | ENA

Rhodocyclaceae bacterium strain:JGI_MLSBIsoalkane1

Project description:Rhodocyclaceae bacterium strain:JGI_MLSBIsoalkane1 Genome sequencing

| PRJNA583094 | ENA

Rhodocyclaceae bacterium

Project description:Rhodocyclaceae bacterium overview

| PRJNA586924 | ENA

Rhodocyclaceae bacterium strain:Thauera-like

Project description:Rhodocyclaceae bacterium strain:Thauera-like Genome sequencing

| PRJNA378339 | ENA

Rhodocyclaceae bacterium Paddy-1

Project description:Rhodocyclaceae bacterium Paddy-1 Genome sequencing and assembly

| PRJNA291117 | ENA

Creation and Characterization of a Genomically Hybrid Strain in the Nitrogen-Fixing Symbiotic Bacterium Sinorhizobium meliloti

Project description:Many bacteria, often associated with eukaryotic hosts and of relevance for biotechnological applications, harbor a multipartite genome composed of more than one replicon. Biotechnologically relevant phenotypes are often encoded by genes residing on the secondary replicons. A synthetic biology approach to developing enhanced strains for biotechnological purposes could therefore involve merging pieces or entire replicons from multiple strains into a single genome. Here we report the creation of a genomic hybrid strain in a model multipartite genome species, the plant-symbiotic bacterium Sinorhizobium meliloti. We term this strain as cis-hybrid, since it is produced by genomic material coming from the same species' pangenome. In particular, we moved the secondary replicon pSymA (accounting for nearly 20% of total genome content) from a donor S. meliloti strain to an acceptor strain. The cis-hybrid strain was screened for a panel of complex phenotypes (carbon/nitrogen utilization phenotypes, intra- and extracellular metabolomes, symbiosis, and various microbiological tests). Additionally, metabolic network reconstruction and constraint-based modeling were employed for in silico prediction of metabolic flux reorganization. Phenotypes of the cis-hybrid strain were in good agreement with those of both parental strains. Interestingly, the symbiotic phenotype showed a marked cultivar-specific improvement with the cis-hybrid strains compared to both parental strains. These results provide a proof-of-principle for the feasibility of genome-wide replicon-based remodelling of bacterial strains for improved biotechnological applications in precision agriculture.

2021-03-17 | MTBLS576 | MetaboLights

Functional genomic analysis of three nitrogenase isozymes in the photosynthetic bacterium Rhodopseudomonas palustris

Project description:To address the question of how photosynthetic bacterium Rhodopseudomonas palustris differentially regulates gene expression of three nitrogenase isozymes (Mo, V, and Fe nitrogenases), we constructed Mo strain (Mo nitrogenase only strain), V strain (V nitrogenase only strain), and Fe strain (Fe nitrogenase only strain), and analyzed the whole genome transcriptome profiles of each mutant and wild-type cells grown under nitrogen-fixing conditions. Keywords: Genetic modification

2005-11-10 | GSE3030 | GEO

Methyloversatilis discipulorum strain:RZ94

Project description:Rhodocyclaceae bacterium RZ94

| PRJNA171852 | ENA

Comparison of Bradyrhizobium japonicum parent strain LO with irr mutant strain LODTM5

Project description:The purpose of the study is to identify Irr-responsive genes in the bacterium Bradyrhizobium japonicum. Parent strain LO was compared to irr mutant strain LODTM5 by whole genome microarray analysis. Both cell types were grown in iron-limited media. Keywords: Comparison of B. japonicum wild type and mutant cells

2006-03-15 | GSE4155 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data