Project description:In general, the endosphere isolate EC18 showed more numbers of genes significantly altered in the presence of root exudates than the soil isolate SB8 . Some of the altered genes in the two strains showed overlap. Some of these genes were previously reported to be involved in microbe-plant interactions, such as organic substance metabolism, oxidation reduction, transmembrane transportation and a subset with putative or unknown function. It was also found some genes showed opposite trend among the two strains.

2017-04-26 | GSE98148 | GEO

Linking soil biology and chemistry in biological soil crust using isolate exometabolomics

Project description:Metagenomic sequencing provides a window into microbial community structure and metabolic potential; however, linking these data to exogenous metabolites that microorganisms process and produce (the exometabolome) remains challenging. Previously, we observed strong exometabolite niche partitioning among bacterial isolates from biological soil crust (biocrust). Here we examine native biocrust to determine if these patterns are reproduced in the environment. Overall, most soil metabolites display the expected relationship (positive or negative correlation) with four dominant bacteria following a wetting event and across biocrust developmental stages. For metabolites that were previously found to be consumed by an isolate, 70% are negatively correlated with the abundance of the isolate’s closest matching environmental relative in situ, whereas for released metabolites, 67% were positively correlated. Our results demonstrate that metabolite profiling, shotgun sequencing and exometabolomics may be successfully integrated to functionally link microbial community structure with environmental chemistry in biocrust.

2018-07-31 | MTBLS492 | MetaboLights

Agromyces sp. 3263 isolate:DPS 3263

Project description:Agromyces sp. 3263 isolate:DPS 3263 Genome sequencing

| PRJNA709390 | ENA

Agromyces

Project description:Agromyces sp. overview

| PRJNA330874 | ENA

Acuticoccus kandeliae strain:J103

Project description:Acuticoccus kandeliae strain:J103 Genome sequencing

| PRJNA430754 | ENA

mangrove

Project description:mangrove studies of soil on microbia