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Infectious hematopoietic necrosis virus strain:OO121-8 | isolate:OO121-8

ABSTRACT: Susceptibility of pike Esox lucius to viral hemorrhagic septicemia virus and infectious hematopoietic necrosis virus and potential transmission to rainbow trout Oncorhynchus mykiss

PROVIDER: PRJNA594484 | ENA |

REPOSITORIES: ENA

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Viral hemorrhagic septicemia virus strain:OO128-25 | isolate:OO128-25

Project description:Susceptibility of pike Esox lucius to viral hemorrhagic septicemia virus and infectious hematopoietic necrosis virus and potential transmission to rainbow trout Oncorhynchus mykiss

| PRJNA594481 | ENA

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Project description:Adult pike Esox lucius was caught in the end of summer (August, 2020) in Teletskoye Lake (Altai region, west Siberia, Russia, 51°79’10’’ N, 87°30’43’’E). Parasite (Triaenophorus crassus) was retrieved from the intestine of pike and immediately frozen in liquid nitrogen. After that, the sample was lyophilized and sent in ice (-20 °C) to the Group of mass spectrometry of Shemyakin-Ovchinnikov Institute of Bioorganic Chemistry RAS (Moscow, Russia) where further analysis was performed.

2021-10-28 | PXD028112 | Pride

Esox lucius transcriptome

Project description:Expression data from 13 tissues in Esox lucius using RNA-seq

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Project description:Esox lucius (northern pike) genome, fEsoLuc1

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RNA-Seq of liver tissue samples from northern pike (Esox lucius), coho salmon (Oncorhynchus kisutch) and Arctic charr (Salvelinus alpinus)

Project description:The aim of this sequencing experiment was to make available liver tissue expression for selected fish species, northern pike (Esox lucius, Eluc), coho salmon (Oncorhynchus kisutch, Okis) and Arctic charr (Salvelinus alpinus, Salp), for comparative expression studies between the species. Samples in replicate of four were sacrificed according to protocols at each of the facilities from where samples were obtained. RNA was extracted from samples and Illumina TruSeq Stranded mRNA libraries were built. Sequencing was performed in two passes on an Illumina HiSeq2500, paired-end 125bp reads. Processed count tables per species as raw counts, FPKM, or TPM, were generated from read alignment to the NCBI genomes of the respective species using STAR and gene level counting using RSEM and NCBI gene annotation.

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fish gut metagenome

Project description:Pike (Esox lucius) gut metagenome. Raw sequence reads.

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Esox lucius isolate:fEsoLuc1

Project description:Esox lucius (northern pike) genome, fEsoLuc1, primary haplotype

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Esox lucius isolate:fEsoLuc1

Project description:Esox lucius (northern pike) genome, fEsoLuc1, alternate haplotype

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Infectious spleen and kidney necrosis virus

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Whole-genome bisulfite sequencing of infectious spleen and kidney necrosis virus

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