Project description:The transcriptome of the planarian Schmidtea mediterranea is not well characterized. We have used RNA-Seq to characterize the transcriptome in both sexual and asexual strains of S. mediterranea from both untreated and irradiated animals. Moreover, we have performed RNA-Seq on RNA purified from FACS sorted neoblasts and differentiated cells. Together these studies expand our understanding of the planarian transcriptome and have identified strain-specific, neoblast-specific, and conserved transcripts. RNA-Seq was performed on RNA isolated from untreated and irradiated S. mediterranea animals from both the sexual and asexual strains, on FACS purified X1 neoblasts, X2 neoblasts, and Xins differentiated cells. One of the raw data files for GSM847465 is missing. The fasta file is provided at http://genome.vcell.uchc.edu/GenomeData02/Graveley_Lab_Public_Data/Planarian/S.mediterranea_SexNIRmRNA3.fa.gz

2012-04-24 | E-GEOD-34326 | biostudies-arrayexpress

Brevundimonas diminuta strain:XGC1

Project description:Brevundimonas diminuta strain:XGC1 Genome sequencing and assembly

| PRJNA280891 | ENA

Schmidtea mediterranea strain:CIW4

Project description:Schmidtea mediterranea strain:CIW4 Genome sequencing and assembly

| PRJNA183841 | ENA

Schmidtea mediterranea strain:S2

Project description:Schmidtea mediterranea strain:S2 Genome sequencing and assembly

| PRJNA379262 | ENA

Martelella mediterranea strain:IOP_24

Project description:Martelella mediterranea strain:IOP_24 Genome sequencing and assembly