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Astatotilapia calliptera x Protomelas taeniolatus

ABSTRACT: F2 hybrid cross between Astatotilapia calliptera x Protomelas taeniolatus raw sequence reads

PROVIDER: PRJNA612298 | ENA |

REPOSITORIES: ENA

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Project description:In this study, we describe the impact of genetic variation on transcript abundance in an F2 population of Arabidopsis thaliana. The RNA-seq resource generated by this study is suitable for expression quantitative trait locus (eQTL) mapping. From the aligned RNA-seq reads, and available genomic data for each of the parents of the cross, we imputed the genomes of each F2 individual (to allow genetic mapping of RNA abundance traits; briefly, genetic differences in aligned RNA-seq reads were used to impute each F2 genome). Our results show that heritable differences on gene expression can be detected using F2 populations (that is, single F2 plants), and shed light on the control of expression differences among strains of this reference plant.

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