Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Rhizospheric Bacterial Community of Tibetan barley

ABSTRACT: Rhizospheric Bacterial Community of Tibetan barley Raw sequence reads

PROVIDER: PRJNA622628 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Similar Datasets

bacterial in long-term CC of Tibetan barley

Project description:bacterial in long-term CC of Tibetan barley Raw sequence reads

| PRJNA759342 | ENA

Identification of microRNAs in response to low potassium stress in the shoots of Tibetan wild barley and cultivated barley [degradome]

Project description:Soil potassium deficiency has become a global problem in agricultural production, seriously restricting crops productions and agricultural sustainable development. Identification of the microRNAs and understanding their functions in response to low K stress will be helpful for developing crop varieties with low K tolerance. Our previous study identified a low K tolerant accession XZ153 from Tibetan wild barley. In this study, small RNA and degradome analysis were performed on two barley genotypes differing in low K tolerance (XZ153, tolerant; ZD9, sensitive) to identify the miRNAs and their targets responding to low K stress. A total of 1108 miRNAs were detected in shoots of XZ153, and ZD9 at 2 d and 7 d after low K stress, and their targets were identified through bioinformatics prediction and degradome analysis. We identified 65 differentially expressed miRNAs responding to low K stress. The results also showed that miR164c, miR169h and miR395a modules could mediate TCA cycle, glycolysis pathway and pentose phosphate pathway responding to low K stress. The osa-miR166g-3p and ghr-miR482b may act as the regulators in Ca2+ signaling pathway in response to low K stress. The methionine salvage cycle involved in ethylene biosynthesis process mediated by miR396c-3p and osa-miR171e-5p might be also involved in responding to low K stress. Some miRNAs, including miR160a, miR396c and miR169h modules, which participated in photosynthesis regulation under low K stress, differed between the two barley genotypes. In conclusion, these exclusively expressed miRNAs and their targets play the crucial roles in low K tolerance.

2020-12-06 | GSE162540 | GEO

Identification of microRNAs in response to low potassium stress in the shoots of Tibetan wild barley and cultivated barley [miRNA-seq]

2020-12-06 | GSE162539 | GEO

Bacterial community in the western Tibetan Plateau

Project description:Bacterial community dissimilarity over the vertical scale of a few centimeters equal to the horizontal differences over several kilometers in the western Tibetan Plateau

| PRJEB8878 | ENA

Spatial transcriptome uncovers rich coordination of metabolism and signaling in bacterial community (data 2)

Project description:Spatial transcriptome uncovers rich coordination of metabolism and signaling in bacterial community (data 2)

2023-03-01 | GSE213531 | GEO

Bacterial Community

Project description:Bacterial Community Metagenome

| PRJNA783784 | ENA

Rhizosphere Bacterial Community Response to Continuous Cropping of Tibetan Barley.

Project description: Not available

| S-EPMC7734106 | biostudies-literature

Comparative Proteomics Analysis of Tibetan Hulless Barley under Drought Stress via Data-Independent Acquisition Mass Spectrometry

Project description:Tibetan hulless barley (Hordeum vulgare L. var. nudum) is one of the primary crops cultivated in the mountains of Tibet suffering from low temperature, high salinity, and drought. Specifically, drought is one of the major abiotic stresses that affect and limit Tibetan barley growth. Thus, it's critical to explore the molecular mechanism of hulless barley during arid or drought environmental conditions for improving crop yield. Here, we employed quantitative proteomics by data-independent acquisition mass spectrometry (DIA-MS) to investigate protein expression in tolerant (XL) and sensitive (DQ) cultivars.

2019-09-26 | PXD015597 | iProX

bacterial communities in the Tibetan Plateau

Project description:bacterial communities in the Tibetan Plateau

| PRJEB25681 | ENA

Data-independent acquisition based quantitative proteomics analysis of Tibetan hulless barley leaves in response to salt stress

Project description:Tibetan hulless barley (Hordeum vulgare L.) growing in the Qinghai-Tibet Plateau is the major staple food crop for the Tibetans. However, because of soil salinity, the agricultural production of hulless barley is challenged by salinity stress. Here, we perform data-independent acquisition (DIA)-based quantitative proteomics of two barley cultivars with differential salinity tolerance under salt stress

2020-12-20 | PXD023237 | iProX

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data