Project description:Comparison of gene expression profiles of widespread peanut cultivars for exploring the expression data in pod and leaf with regard to signatures of artificial selection We investigated the overall expression by hybridizing the microarray (GPL13178) with RNA samples from pods and leaves of five selected representative peanut varieties (Fuhuasheng, Shitouqi, Yueyou116, Shanyou523, and Yueyou7), which were widely cultivated in different periods of the past fifty years in southern China. We used the RNA sample from Yueyou7 pod as a reference for all the pod hybridizations, and used the Yueyou7 leaf sample as a reference for all the leaf hybridizations. Field grown plants under normal irrigation were used for sample collection. Replicates with dye-swap were performed for each genotype.

2012-06-18 | E-GEOD-30128 | biostudies-arrayexpress

Soil samples from peanut production fields

Project description:Soil samples from peanut production fields Raw sequence reads

| PRJNA471338 | ENA

Single cell RNA sequencing of peanut-responsive T cells

Project description:Peanut-responsive T cells from peanut allergic subjects were identified and selected based on CD154 expression after stimulation of peripheral blood mononuclear cells with crude peanut extract for 18h. As controls, polyclonally activated CD4+ T cells from peanut allergic subjects were selected. Additional controls included CD4+CD25+CD127- Tregs from peanut allergic or healthy controls. Single cells were obtained using the C1 system from Fluidigm, and a barcoded library constructed. Sequencing (Illumina) was performed using 100 nt paired end reads. Data on a total of 431 cells was available. The goal of the study was to understand the heterogeneity of the peanut-specific T cell response.

2017-12-01 | GSE98852 | GEO

Peanut Baisha1016

Project description:Peanut Baisha1016 Raw sequence reads

| PRJNA513228 | ENA

peanut rhizosphere

Project description:peanut rhizosphere Raw sequence reads

| PRJNA532487 | ENA

Soil microbiome of pineapple field

Project description:Soil microbiome of pineapple field Raw sequence reads

| PRJNA531356 | ENA

Soil 16S rRNA across China

Project description:Soil 16S rRNA across China Raw sequence reads