Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Comparison of Transcriptomes of Wild Type and Paraquat-treated cells by Next Generation RNA Sequencing

ABSTRACT: Comparison of Transcriptomes of Wild Type and Paraquat-treated cells by Next Generation RNA Sequencing

PROVIDER: PRJNA633620 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Similar Datasets

Comparison of Transcriptomes of Wild Type and Paraquat-treated cells by Next Generation RNA Sequencing

Project description:We use RNAseq to compare the transcriptomes of wild type and cells treated with 2.5 mM paraquat (PQ) for 8 hr. We find that PQ treatment results in changes in the transcripts for hundreds of genes. A notable subset of PQ-induced transcripts encodes proteins activated by the retrograde response pathway. This pathway is activated by ETC dysfunction and regulates carbohydrate metabolism to increase synthesis of biosynthetic intermediates through pathways including the TCA cycle, glutamine biosynthetic pathway, and isocitrate metabolism. Transcripts encoding oxidative stress response proteins (e.g. amino acid and iron transporters and siderophores) are also more abundant in PQ-treated cells.

2020-05-19 | GSE150804 | GEO

Next Generation Sequencing Facillitates Quantitative Analysis of Wild Type and snrk1a1/a2 mutant Transcriptomes

Project description:Next Generation Sequencing Facillitates Quantitative Analysis of Wild Type and snrk1a1/a2 mutant Transcriptomes

2021-12-31 | GSE183118 | GEO

Acinetobacter oleivorans DR1: paraquat-treated and phenazine methosulfate-treated

Project description:Transcriptional profiling of A. oleivorans DR1 cells in the presence of paraquat and phenazine methosulfate

2015-06-29 | GSE70356 | GEO

Next Generation Sequencing of Wild Type and Oslec1-1 Transcriptomes

Project description:Next Generation Sequencing of Wild Type and Oslec1-1 Transcriptomes

| PRJNA745207 | ENA

Next Generation Sequencing Analysis of Wild Type and fl3 Transcriptomes in 10DAP(day after pollination) endosperm

Project description:Maize floury3 (fl3) is a classic semi-dominant mutant that shows severe defects in the endosperm but appears normal in the plant.The goals of this study are to compare WT to fl3 transcriptomes in 10DAP(day after pollination) endosperm by Next Generation Sequencing.

2017-07-22 | GSE95039 | GEO

Next Generation Sequencing Facilitates Quantitative Analysis of Wild type and RBM3 knockout cortex Transcriptomes during maternal hypothermia

Project description:Next-generation sequencing (NGS) has revolutionized systems-based analysis of gene expression. The goals of this study are to compare the different transcripts between Wild type and RBM3 knockout cortex Transcriptomes during maternal hypothermia

2018-01-19 | GSE109362 | GEO

Comparison of Transcriptomes of Wild Type and aan1∆ cells by Next Generation RNA Sequencing

Project description:We use RNAseq to compare the transcriptomes of wild type and aan1∆ cells to determine the mechanism behind AAN1 function in the actin cytoskeleton and lifespan. We find deleting AAN1 results in changes in expression of genes involved in branched-chain amino acid synthesis.

2022-02-07 | GSE174157 | GEO

RNA-seq of Paraquat-treated cells

Project description:RNA-seq of Paraquat-treated cells

| PRJNA632635 | ENA

Comparison of Transcriptomes of Wild Type and aan1∆ cells by Next Generation RNA Sequencing

Project description:Comparison of Transcriptomes of Wild Type and aan1∆ cells by Next Generation RNA Sequencing

| PRJNA728644 | ENA

Next Generation Sequencing of different ovine muscle's Transcriptomes

Project description:We report the application of single-molecule-based sequencing technology for high-throughput profiling of different ovine muscle's transcriptomes. 9.27 gigabases of sequence from two different breeds of sheep. Examination of 2 different muscle's transcriptomes in 2 breed types.

2013-12-01 | E-GEOD-43316 | biostudies-arrayexpress

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data