Project description:JMJD2A was chromatin immunoprecipitated from HEK293T cells overexpressing GFP-JMJD2A. From Van Rechem et al. 2011 JBC Determination of JMJD2A binding sites by MA2C analysis

2013-08-01 | E-GEOD-48765 | biostudies-arrayexpress

Comparison of ZNF830 knockdown in HEK293T cells to scrambled shRNA control cells

Project description:Comparison of ZNF830 knockdown in HEK293T cells to scrambled shRNA control cells

| PRJNA481971 | ENA

ZNF728 ChIP-seq in HEK293T cells

Project description:Genome-wide binding profile of the primate-specific KRAB zinc finger protein ZNF728 in a HEK293T cell line overexpressing the protein.

2022-01-28 | GSE163542 | GEO

Normal and DNMT3L-overexpressing human neurons

Project description:Normal and DNMT3L-overexpressing human neurons

| PRJNA660025 | ENA

Ribo-seq of HEK293T overexpressing WT and G240R GARS

Project description:Charcot-Marie-Tooth (CMT) disease can be caused by mutations in Aminoacyl-tRNA-Synthetases, including G240R mutation in Glycyl-tRNA-Synthetase (GARS). Ribo-seq generates snapshots of translating ribosomes on mRNA and therefore allows analysis of ribosome pausing mRNA. Here we performed Ribo-seq on lysates of HEK293T cells overexpressing GARS, WT or G240R, to dissect mechanism of CMT linked with translation. We found that GARS G240R causes pausing of ribosomes with glycine codons in A-site. The effect is specific for 21 nt ribosome-protected fragments, produced by ribosomes with empty A-sites, suggestive of the deficit of charged Glycyl-tRNA in GARS G240R-CMT.

2021-09-14 | E-MTAB-10342 | biostudies-arrayexpress

Ribo-seq of HEK293T overexpressing WT and G240R GARS

Project description:Ribo-seq of HEK293T overexpressing WT and G240R GARS

| PRJEB44238 | ENA

ADAR2 in HEK293T cells

Project description:ADAR2 in HEK293T cells

| PRJNA422795 | ENA