Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Red fox and corsac fox

ABSTRACT: gut Metagenome of red fox and corsac fox

PROVIDER: PRJNA646811 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR12261817_1.fastq.gz	Fastqsanger.gz
	SRR12261817_2.fastq.gz	Fastqsanger.gz
	SRR12261818_1.fastq.gz	Fastqsanger.gz
	SRR12261818_2.fastq.gz	Fastqsanger.gz
	SRR12261819_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 12

Similar Datasets

red fox and corsac fox

Project description:gut Metagenome of red fox and corsac fox

| PRJNA646811 | ENA

Red fox metagenomics

Project description:Does the gut microbiome shape behavioral modifications during red fox (Vulpes vulpes) domestication?

| PRJEB29232 | ENA

feces

Project description:16S rRNA of red fox and corsac fox

| PRJNA646772 | ENA

Vulpes corsac

Project description:Vulpes corsac overview

| PRJNA880379 | ENA

Vulpes corsac

Project description:Vulpes corsac Genome assembly

| PRJNA880477 | ENA

Vulpes corsac

Project description:Vulpes corsac Transcriptome sequence reads

| PRJNA858197 | ENA

Vulpes corsac

Project description:Vulpes corsac Raw sequence reads

| PRJNA857482 | ENA

Transcriptome analysis provides new insights into cold adaptation of corsac fox (<i>Vulpes Corsac</i>).

Project description:Vulpesare widely distributed throughout the world and have undergone drastic physiological and phenotypic changes in response to their environment. However, little is known about the underlying genetic causes of these traits, especially Vulpes corsac. In this study, RNA-Seq was used to obtain a comprehensive dataset for multiple pooled tissues of corsac fox, and selection analysis of orthologous genes was performed to identify the genes that may be influenced by the low-temperature environment. More than 6.32 Gb clean reads were obtained and assembled into a total of 173,353 unigenes with an average length of 557 bp for corsac fox. Selective pressure analysis showed that 16 positively selected genes (PSGs) were identified in corsac fox, red fox, and arctic fox. Enrichment analysis of PSGs showed that the LRP11 gene was enriched in several pathways related to the low-temperature response and might play a key role in response to environmental stimuli of foxes. In addition, several positively selected genes were related to DNA damage repair (ELP2 and CHAF1A), innate immunity (ARRDC4 and S100A12), and the respiratory chain (NDUFA5), and these positively selected genes might play a role in adaptation to harsh wild fox environments. The results of common orthologous gene analysis showed that gene flow or convergent evolution might be an important factor in promoting regional differentiation of foxes. Our study provides a valuable transcriptomic resource for the evolutionary history of the corsac fox and the adaptations to the extreme environments.

| S-EPMC9019142 | biostudies-literature

Polar Fox Lagoon sediment

Project description:Polar Fox Lagoon sediment Metagenome

| PRJNA821074 | ENA

red swamp crayfish gut

Project description:red swamp crayfish gut Metagenome

| PRJNA671745 | ENA