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Flavobacterium macrobrachii strain:LMG 25203 | isolate:not collected

ABSTRACT: Flavobacterium macrobrachii strain:LMG 25203 | isolate:not collected Genome sequencing and assembly

PROVIDER: PRJNA659424 | ENA |

REPOSITORIES: ENA

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Transcriptome profiling reveals the EanI/R quorum sensing regulon in Pantoea ananatis LMG 2665T

Project description:Background: Pantoea ananatis LMG 2665T synthesizes and utilizes acyl homoserine lactones (AHLs) for signaling. In this strain, short chain AHLs (C4 to C8) are produced by the EanI/R quorum sensing (QS) system that is involved in pathogenicity and biofilm formation. The complete set of genes regulated by the EanI/R system in P. ananatis LMG 2665T is still not fully known. In the present study, RNA-seq was used to analyze the transcriptome profiles controlled by the EanI/R system in this strain by comparing the wild type strain and its QS mutant 2665T ean∆I/R during lag and log stages. The RNA seq data was validated by RT qPCR. Results: The results showed that the EanI/R regulon in P. ananatis LMG 2665T comprised 144 genes, constituting 3.3% of the whole transcriptome under the experimental conditions in this study. The majority of genes regulated by the EanI/R system included genes for flagella assembly, bacterial chemotaxis, pyruvate metabolism, two component system, metabolic pathways, microbial metabolism and biosynthesis of secondary metabolites. Conclusions: This is the first study to identify the EanI/R QS regulon in P. ananatis LMG 2665T. Functional analysis of genes regulated the EanI/R system in LMG 2665T could help unveil genes that play a vital role in pathogenesis and survival strategies of this pathogen.

2018-10-31 | GSE87207 | GEO

Flavobacterium piscinae strain:KCTC 62513 | isolate:not collected

Project description:Flavobacterium piscinae strain:KCTC 62513 | isolate:not collected Genome sequencing and assembly

| PRJNA659465 | ENA

Flavobacterium lindanitolerans strain:DSM 21886 | isolate:not collected

Project description:Flavobacterium lindanitolerans strain:DSM 21886 | isolate:not collected Genome sequencing and assembly

| PRJNA659419 | ENA

Flavobacterium buctense strain:JCM 30750 | isolate:not collected

Project description:Flavobacterium buctense strain:JCM 30750 | isolate:not collected Genome sequencing

| PRJNA659416 | ENA

Flavobacterium psychrolimnae strain:LMG 22018

Project description:Flavobacterium psychrolimnae strain:LMG 22018 Genome sequencing and assembly

| PRJNA479391 | ENA

Flavobacterium chilense strain:LMG 26360

Project description:Flavobacterium chilense strain:LMG 26360 Genome sequencing and assembly

| PRJNA312778 | ENA

Flavobacterium chungangense LMG 26729

Project description:Flavobacterium chungangense LMG 26729 Genome sequencing and assembly

| PRJNA236354 | ENA

Flavobacterium succinicans LMG 10402

Project description:Flavobacterium succinicans LMG 10402 Genome sequencing and assembly

| PRJNA235745 | ENA

Flavobacterium chilense strain:LMG 26360

Project description:Flavobacterium chilense strain:LMG 26360 Genome sequencing

| PRJNA243417 | ENA

Flavobacterium reichenbachii strain:LMG 25512

Project description:Flavobacterium reichenbachii LMG 25512Genome sequencing

| PRJNA255951 | ENA

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