Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

RNAsequencing of the ventral rhombomere 1 of the developing mouse [bulk RNA-seq]

ABSTRACT: RNAsequencing of the ventral rhombomere 1 of the developing mouse [bulk RNA-seq]

PROVIDER: PRJNA663555 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Similar Datasets

RNAsequencing of the ventral rhombomere 1 of the developing mouse [bulk RNA-seq]

Project description:Sequencing of the mouse ventral rhombomere 1 tissues and cells to characterize the Tal1-dependent and -independent neuronal precursor groups. The data allowed to describe the cell types in the R1 brain region, and map gene expression dynamics during bifurcation of the GABAergic and glutamatergic lineages. Our results provide a framework for understanding the development of cellular diversity in the tegmental nuclei.

2020-10-10 | GSE157961 | GEO

Single-cell RNAsequencing of the ventral rhombomere 1 of the developing mouse [INDROPS]

Project description:Single-cell RNAsequencing of the ventral rhombomere 1 of the developing mouse [INDROPS]

| PRJNA663554 | ENA

Single-cell RNAsequencing of the ventral rhombomere 1 of the developing mouse [10X Genomics]

Project description:Single-cell RNAsequencing of the ventral rhombomere 1 of the developing mouse [10X Genomics]

| PRJNA663556 | ENA

Single-cell RNAsequencing of the ventral rhombomere 1 of the developing mouse [INDROPS]

Project description:Sequencing of the mouse ventral rhombomere 1 tissues and cells to characterize the Tal1-dependent and -independent neuronal precursor groups. The data allowed to describe the cell types in the R1 brain region, and map gene expression dynamics during bifurcation of the GABAergic and glutamatergic lineagesOur results provide a framework for understanding the development of cellular diversity in the tegmental nuclei.

2020-10-10 | GSE157962 | GEO

Single-cell RNAsequencing of the ventral rhombomere 1 of the developing mouse [10X Genomics]

Project description:Sequencing of the mouse ventral rhombomere 1 tissues and cells to characterize the Tal1-dependent and -independent neuronal precursor groups. The data allowed to describe the cell types in the R1 brain region, and map gene expression dynamics during bifurcation of the GABAergic and glutamatergic lineagesOur results provide a framework for understanding the development of cellular diversity in the tegmental nuclei.

2020-10-10 | GSE157963 | GEO

RNA sequencing of the ventral rhombomere 1 of the developing mouse

Project description:RNA sequencing of the ventral rhombomere 1 of the developing mouse

| PRJNA663553 | ENA

Transcriptome-based analysis of developing dorsal and ventral hippocampus

Project description:We report the differentiation of dorsal and ventral hippocampus in developing rats by performing and analyzing transcriptome profiling.

2017-12-17 | GSE96079 | GEO

Gene expression differences between Gata2cko and wt mouse rhombomere 1

Project description:During development, rhombomere 1 gives rise to a multitude of cell types, including serotonergic as well as glutamatergic neurons that populate the raphe nuclei. Transcription factor Gata2 has been shown to regulate the development of the serotonergic neurons in the rhombomere 1. To further understand the role and targets of Gata2 in the rhombomere 1 during development, we used cDNA microarrays to compare gene expression in the embryonic day 12.5 (E12.5) rhombomere 1 tissues extracted from wild-type and Gata2 mutant embryos.

2016-11-01 | GSE89354 | GEO

A single cell transcriptome atlas of the developing zebrafish hindbrain [scRNA-Seq]

Project description:Purpose: The goal of this study is to understand the progressive patterning of neurogenesis of the developing zebrafish hindbrain. 16hpf, 24hpf and 44hpf zebrafish hindbrains were used for single-cell RNA-sequencing with the aim to uncover hindbrain development. Methods: 40 microdissected hindbrains per each stage were dissociated at loaded into the 10x Genomics Chromium Platform, and sequenced using Illumina HiSeq 4000. Conclusions: Our study constitute a resource of hindbrain gene expression during development. We have identified transcriptional programs involved in: rhombomere segmental identity, dorso-ventral patterning, boundary and centre progenitor cells and temporal regulation of neurogenesis.

2019-12-05 | GSE141427 | GEO

Hoxb1 mutant mRNA levels in rhombomere 4 at E10.5

Project description:Hoxb1 is required for proper specification of rhombomere 4 and the facial motor neurons. This study analyzed gene expression in the corresponding hindbrain segment of E10.5 mutant embryos. Several genetic pathways were found altered, including transcription factors such as Phox2b, Gata3, Nkx2-2 and Nkx6-1. Keywords: hindbrain development, rhombomere 4, Hoxb1

2006-08-28 | GSE5126 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data