Project description:In order to understand how Pseudomonas aeruginosa responds to low oxygen we grew strain PAO1 with 3 different oxygen concentrations: 2%, 0.4% and 0% supplemented with nitrate as an electron acceptor. Gene expression under these conditions was compared to that of cells grown with 20% oxygen. Experiment Overall Design: Transcriptome profiles of Pseudomonas aeruginosa cells grown with 20% oxygen were compared to transcriptome profiles obtained by growing cells with 2%, 0.4% and 0% oxygen (with nitrate as the electron acceptor).

2008-06-15 | E-GEOD-6741 | biostudies-arrayexpress

Pseudomonas aeruginosa strain:39648-20

Project description:Pseudomonas aeruginosa strain:39648-20 Genome sequencing and assembly

| PRJNA681476 | ENA

Effects of arsenic and Pseudomonas aeruginosa infection on gene expression in human airway epithelial cells

Project description:Purpose: To determine effects of arsenic on gene expression in polarized primary human bronchial epithelial (HBE) cells and impact on transcriptional response to Pseudomonas aeruginosa infection Methods: mRNA profiles of HBE cells from 6 donors exposed to 0, 5, 10 or 50 ug/L total arsenic +/- Pseudomonas aeruginosa (48 samples) were generated using Illumina sequencing, aligned in CLC Genomics workbench and analyzed for DE in EdgeR Findings: 20-30 million reads were mapped per sample and transcripts were identifed that were significantly differentially expressed in response to arsenic and Pseudomonas aeruginosa

2017-06-26 | GSE97036 | GEO

Pseudomonas guariconensis strain:20-MO00622-0

Project description:Pseudomonas guariconensis strain:20-MO00622-0 Genome sequencing and assembly

| PRJNA673457 | ENA

Pseudomonas guariconensis strain:20-MO00623-0

Project description:Pseudomonas guariconensis strain:20-MO00623-0 Genome sequencing and assembly

| PRJNA673458 | ENA

Pseudomonas zeshuii strain:20-MO00624-0

Project description:Pseudomonas zeshuii strain:20-MO00624-0 Genome sequencing and assembly

| PRJNA673460 | ENA

Pseudomonas monteilii strain:20-MO00625-0

Project description:Pseudomonas monteilii strain:20-MO00625-0 Genome sequencing and assembly