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Single GAM datasets collected with one nuclear profile each (samples failing QC)

ABSTRACT: Single GAM datasets collected with one nuclear profile each (samples failing QC)

PROVIDER: PRJNA700650 | ENA |

REPOSITORIES: ENA

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Single GAM datasets collected with one nuclear profile each (samples failing QC)

Project description:Technologies for measuring 3D genome topology are increasingly important for studying mechanisms of gene regulation, for genome assembly and for mapping of genome rearrangements. We applied the original GAM protocol to Mouse ES cells to generate a deeper dataset for comparison to Hi-C.

2022-06-13 | GSE166377 | GEO

Multiplex GAM datasets collected with an average of three nuclear profiles each (samples failing QC)

Project description:Multiplex GAM datasets collected with an average of three nuclear profiles each (samples failing QC)

| PRJNA700652 | ENA

Multiplex GAM datasets collected with an average of three nuclear profiles each (samples failing QC)

Project description:Technologies for measuring 3D genome topology are increasingly important for studying mechanisms of gene regulation, for genome assembly and for mapping of genome rearrangements. We developed multiplex-GAM, a faster and more affordable version of Genome Architecture Mapping (GAM), a ligation-free technique to map chromatin contacts genome-wide. We applied multiplex-GAM to Mouse ES cells.

2022-06-13 | GSE166379 | GEO

Multiplex GAM datasets collected with an average of three nuclear profiles each

Project description:Technologies for measuring 3D genome topology are increasingly important for studying mechanisms of gene regulation, for genome assembly and for mapping of genome rearrangements. We developed multiplex-GAM, a faster and more affordable version of Genome Architecture Mapping (GAM), a ligation-free technique to map chromatin contacts genome-wide. We applied multiplex-GAM to Mouse ES cells.

2022-06-13 | GSE166380 | GEO

Multiplex GAM datasets collected with an average of three nuclear profiles each

Project description:Multiplex GAM datasets collected with an average of three nuclear profiles each

| PRJNA700651 | ENA

Single (1 NP) GAM datasets collected from mouse ES cells

2022-06-13 | GSE166378 | GEO

Transcription profiling of human THP-1 cells wild type vs overexpressing GAM or siRNAs directed against GAM (siGAM) challenged by LPS

Project description:24 hours following transfection with either a control mix, a construct overexpressing GAM or siRNAs directed against GAM (siGAM), THP-1 cells were challenged with LPS 100 ng/ml. RNAs were analyzed after 6 hours of LPS challenge

2010-06-09 | E-TABM-868 | biostudies-arrayexpress

Single and Multiplex GAM datasets from mouse ES cells

Project description:Single and Multiplex GAM datasets from mouse ES cells

| PRJNA700649 | ENA

Single (1 NP) GAM datasets collected from mouse ES cells

Project description:Single (1 NP) GAM datasets collected from mouse ES cells

| PRJNA700653 | ENA

Gene expression in ischemic, end-stage failing and non-failing human hearts

Project description:A goal of this study was to identify and investigate previously unrecognized components of the remodeling process in the progression to heart failure by comparing gene expression in ischemic, failing (F) to non-failing (NF) hearts. These results also were compared to the changes observed in a proteomic analysis of F and NF hearts. RNA extracted from the left ventricle was hybridized to Affymetrix arrays to identify gene expression differences in ischemic, end-stage failing versus non-failing hearts. biological replicate: LV_NF_001, LV_NF002, LV_NF004, LV_NF005 biological replicate: LV_F_003, LV_F005, LV_F009, LV_F006

2016-02-08 | E-GEOD-76701 | biostudies-arrayexpress

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