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Single (1 NP) GAM datasets collected from mouse ES cells

ABSTRACT: Single (1 NP) GAM datasets collected from mouse ES cells

PROVIDER: PRJNA700653 | ENA |

REPOSITORIES: ENA

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Single (1 NP) GAM datasets collected from mouse ES cells

Project description:Technologies for measuring 3D genome topology are increasingly important for studying mechanisms of gene regulation, for genome assembly and for mapping of genome rearrangements. We applied the original GAM protocol to Mouse ES cells to generate a deeper dataset for comparison to Hi-C.

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Multiplex GAM datasets collected with an average of three nuclear profiles each

Project description:Technologies for measuring 3D genome topology are increasingly important for studying mechanisms of gene regulation, for genome assembly and for mapping of genome rearrangements. We developed multiplex-GAM, a faster and more affordable version of Genome Architecture Mapping (GAM), a ligation-free technique to map chromatin contacts genome-wide. We applied multiplex-GAM to Mouse ES cells.

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Single and Multiplex GAM datasets from mouse ES cells

Project description:Single and Multiplex GAM datasets from mouse ES cells

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Multiplex GAM datasets collected with an average of three nuclear profiles each (samples failing QC)

Project description:Technologies for measuring 3D genome topology are increasingly important for studying mechanisms of gene regulation, for genome assembly and for mapping of genome rearrangements. We developed multiplex-GAM, a faster and more affordable version of Genome Architecture Mapping (GAM), a ligation-free technique to map chromatin contacts genome-wide. We applied multiplex-GAM to Mouse ES cells.

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Single GAM datasets collected with one nuclear profile each (samples failing QC)

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Single GAM datasets collected with one nuclear profile each (samples failing QC)

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Project description:Multiplex GAM datasets collected with an average of three nuclear profiles each

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Methylome analysis of 18 wild-type and mutant mouse ES, NP and MEF cells

Project description:The analysis of the 18 methylomes comprise 3 biological replicates of TDG+/- ES cells, 3 biological replicates of TDG-/- ES cells, 3 biological replicates of TDG+/- NP cells, 3 biological replicates of TDG-/- NP cells, 3 biological replicates of TDG+/+ MEF cells and 3 biological replicates of TDG-/- MEF cells.

2011-02-24 | GSE27468 | GEO

Transcription profiling of human THP-1 cells wild type vs overexpressing GAM or siRNAs directed against GAM (siGAM) challenged by LPS

Project description:24 hours following transfection with either a control mix, a construct overexpressing GAM or siRNAs directed against GAM (siGAM), THP-1 cells were challenged with LPS 100 ng/ml. RNAs were analyzed after 6 hours of LPS challenge

2010-06-09 | E-TABM-868 | biostudies-arrayexpress

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