Project description:description Blastocystis sp. is a highly prevalent anaerobic eukaryotic parasite of humans and animals. The genome of several representatives has been sequenced revealing specific traits such as an intriguing 3’-end processing of primary transcripts. We have acquired a first high-throughput proteomics dataset on the difficult to cultivate ST4 isolate WR1 and detected 2,761 proteins. We evidenced for the first time by proteogenomics a functional termination codon derived from transcript polyadenylation for seven different key cellular components.

2017-09-11 | PXD006588 | Pride

Steinernema abbasi isolate:NBAII Sa04

Project description:Mitochondrial DNA genome assembly of Steinernema abbasi NBAII Sa04 local isolate

| PRJNA417985 | ENA

Comparative genomics of Steinernema reveals deeply conserved gene regulatory networks

Project description:Parasitism is a major ecological niche for a variety of nematodes. Multiple nematode lineages have specialized as pathogens, including deadly parasites of insects that are used in biological control. We have sequenced and analyzed the draft genomes and transcriptomes of the entomopathogenic nematode Steinernema carpocapsae and four congeners (S. scapterisci, S. monticolum, S. feltiae, and S. glaseri). We used these genomes to establish phylogenetic relationships, explore gene conservation across species, and identify genes uniquely expanded in insect parasites. Protein domain analysis in Steinernema revealed a striking expansion of numerous putative parasitism genes, including certain protease and protease inhibitor families, as well as fatty acid- and retinol-binding proteins. Stage-specific gene expression of some of these expanded families further supports the notion that they are involved in insect parasitism by Steinernema. We show that sets of novel conserved non-coding regulatory motifs are associated with orthologous genes in Steinernema and Caenorhabditis. We have identified a set of expanded gene families that are likely to be involved in parasitism. We have also identified a set of non-coding motifs associated with groups of orthologous genes in Steinernema and Caenorhabditis involved in neurogenesis and embryonic development that are likely part of conserved protein–DNA relationships shared between these two genera.

2015-06-05 | GSE68588 | GEO

Pseudomonas sp. SC3(2021)

Project description:Pseudomonas sp. SC3(2021) Genome sequencing

| PRJNA756436 | ENA

Pseudomonas sp. B2(2021)

Project description:Pseudomonas sp. B2(2021) Genome sequencing

| PRJNA698291 | ENA

Streptococcus sp. 9.1(2021)

Project description:Streptococcus sp. 9.1(2021) Genome sequencing

| PRJNA721535 | ENA